RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GNG7O60262 68 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 OR2J3O76001 311 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 LY86O95711 162 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 HPRT1P00492 218 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TPT1P13693 172 aaKnown RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 S100A11P31949 105 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 EFNB3Q15768 340 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 NDUFA5Q16718 116 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 UTF1Q5T230 341 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 HEPN1Q6WQI6 88 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 Q6ZRG5 221 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TMUB2Q71RG4 321 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 H1FOOQ8IZA3 346 aaPredicted RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 SLC7A5P1Q8MH63 180 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 OR2C3Q8N628 320 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 DUSP18Q8NEJ0 188 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 OR4C13Q8NGP0 309 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 VSTM2AQ8TAG5 236 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 STOML3Q8TAV4 291 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 MITD1Q8WV92 249 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 QTRT1Q9BXR0 403 aaKnown RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM222Q9H0R3 208 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 TMEM231Q9H6L2 316 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 SLC39A9Q9NUM3 307 aa4.47□□□□□ -1.69
VPS13C-209ENST00000560637 SOX21Q9Y651 276 aaPredicted RBP4.47□□□□□ -1.69
VPS13C-209ENST00000560637 UNC79Q9P2D8 2635 aa4.46□□□□□ -1.69
VPS13C-209ENST00000560637 TRAV3A0A0B4J244 114 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 LINC00473A8K010 186 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 E5RGE8 158 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SCGB2A1O75556 95 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SCAF4O95104 1147 aaKnown RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 NAPSAO96009 420 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 GIPP09681 153 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 ZFP36P26651 326 aaKnown RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 CNTFRP26992 372 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 MEF2CQ06413 473 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SLC38A11Q08AI6 406 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 MST1LQ2TV78 715 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 FBXL19-AS1Q494R0 122 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 C19orf35Q6ZS72 473 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 OR10W1Q8NGF6 305 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 OR1L8Q8NGR8 309 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 AIFM2Q9BRQ8 373 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 RTBDNQ9BSG5 229 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 PPP1R14DQ9NXH3 145 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 JKAMPQ9P055 326 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 UBQLN2Q9UHD9 624 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 POLR3KQ9Y2Y1 108 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 ADAMTS20P59510 1910 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 CHD3Q12873 2000 aaKnown RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SMG1Q96Q15 3661 aaKnown RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 PIGBOS1A0A0B4J2F0 54 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 OR2A4O95047 310 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 CLEC3BP05452 202 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 FGF2P09038 288 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SAA1P0DJI8 122 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SLC25A6P12236 298 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 SRD5A1P18405 259 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 NPY1RP25929 384 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 DYNLT3P51808 116 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 H2BFSP57053 126 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 UBE2KP61086 200 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 GAMTQ14353 236 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 FAM76BQ5HYJ3 339 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 RPL7L1Q6DKI1 246 aaKnown RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 C11orf87Q6NUJ2 197 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF418Q8TF45 676 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 BLNKQ8WV28 456 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 OR2A7Q96R45 310 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 FBXL17Q9UF56 701 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 KLF2Q9Y5W3 355 aaPredicted RBP4.46□□□□□ -1.7
VPS13C-209ENST00000560637 CRYBG3Q68DQ2 2970 aa4.46□□□□□ -1.7
VPS13C-209ENST00000560637 CRYM-AS1A6NIL9 109 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 IGLV3-1P01715 115 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 IGHV4-38-2P0DP08 117 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF134P52741 427 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 FGF8P55075 233 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 ERVK11-1P61568 191 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 TMEM249Q2WGJ8 235 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 OR4A47Q6IF82 309 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 ZNF529Q6P280 563 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 LINC01356Q8N9X3 169 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 OR1B1Q8NGR6 318 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 OR2T10Q8NGZ9 312 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 C17orf50Q8WW18 174 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 NEURL2Q9BR09 285 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SLC25A33Q9BSK2 321 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SEBOXQ9HB31 216 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 RAB18Q9NP72 206 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 TCF19Q9Y242 345 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 UTP20O75691 2785 aaKnown RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 MOSP00540 346 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 APOC3P02656 99 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 GATA2P23769 480 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 MC5RP33032 325 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 HABP2Q14520 560 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 SURF2Q15527 256 aaPredicted RBP4.45□□□□□ -1.7
VPS13C-209ENST00000560637 HAGHQ16775 308 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 CYB5R2Q6BCY4 276 aa4.45□□□□□ -1.7
VPS13C-209ENST00000560637 LDLRAD3Q86YD5 345 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms