RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 PPP5D1E7EU14 171 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SULT1C2O00338 296 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 KBTBD11O94819 623 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 NDUFB8O95169 186 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 OR2C1O95371 312 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 AREGP15514 252 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 TGFBR1P36897 503 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 MECP2P51608 486 aaKnown RBP7.76□□□□□ -1.17
LDLR-214ENST00000560628 FXYD4P59646 89 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 C15orf32Q32M92 178 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 ADAMTSL5Q6ZMM2 481 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 ZNF66Q6ZN08 573 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SLC25A42Q86VD7 318 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SPAG16Q8N0X2 631 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 PUSL1Q8N0Z8 303 aaKnown RBP7.76□□□□□ -1.17
LDLR-214ENST00000560628 OR13F1Q8NGS4 319 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 VSTM2AQ8TAG5 236 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 TMEM167AQ8TBQ9 72 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 TM2D3Q9BRN9 247 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SLC5A7Q9GZV3 580 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 AUNIPQ9H7T9 357 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SLC2A9Q9NRM0 540 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SIGLEC8Q9NYZ4 499 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 PEMTQ9UBM1 199 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 SELENOKQ9Y6D0 94 aa7.76□□□□□ -1.17
LDLR-214ENST00000560628 KMT2CQ8NEZ4 4911 aaKnown RBP7.76□□□□□ -1.17
LDLR-214ENST00000560628 A8MZ25 164 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 HRASP01112 189 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 PPYP01298 95 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 REG1AP05451 166 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 ZNF735P0CB33 412 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 LYL1P12980 280 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 EDN2P20800 178 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 SCAND1P57086 179 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 HAGHQ16775 308 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 CD300EQ496F6 205 aaPredicted RBP7.75□□□□□ -1.17
LDLR-214ENST00000560628 CASC10Q5T4H9 136 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 ZFAND6Q6FIF0 208 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 LCN12Q6JVE5 192 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 GTSCR1Q86UQ5 136 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 Q8N402 240 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 FANCD2OSQ96PS1 177 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 THAP7Q9BT49 309 aaPredicted RBP7.75□□□□□ -1.17
LDLR-214ENST00000560628 HRASLSQ9HDD0 168 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 ZNF257Q9Y2Q1 563 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 DMRT1Q9Y5R6 373 aa7.75□□□□□ -1.17
LDLR-214ENST00000560628 HUWE1Q7Z6Z7 4374 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 A0A0A6YYH2 397 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 TRAV3A0A0B4J244 114 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 A6NJ64 397 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 ZNF785A8K8V0 405 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 NPIPB5A8MRT5 1133 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 AIREO43918 545 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 GGCTO75223 188 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 RPA2P15927 270 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 HLA-GP17693 338 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 PSMB6P28072 239 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 MAS1LP35410 378 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 RPS19P39019 145 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 KIR2DS2P43631 304 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 LSM3P62310 102 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 RPL8P62917 257 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 DEFB114Q30KQ6 69 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 KCTD21Q4G0X4 260 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 OR4A47Q6IF82 309 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 CLEC19AQ6UXS0 136 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 TMEM17Q86X19 198 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 ZBTB34Q8NCN2 500 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 OR51H1Q8NH63 302 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 DYNLRB2Q8TF09 96 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 GIMAP1Q8WWP7 306 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 KCTD12Q96CX2 325 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 CITED4Q96RK1 184 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 PALMDQ9NP74 551 aa7.74□□□□□ -1.17
LDLR-214ENST00000560628 GAR1Q9NY12 217 aaKnown RBP7.74□□□□□ -1.17
LDLR-214ENST00000560628 ZNF320A2RRD8 509 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 C2orf70A6NJV1 201 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 CGB1A6NKQ9 187 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 XRCC3O43542 346 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 CRYGCP07315 174 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 DEFA4P12838 97 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 FOLR2P14207 255 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 ARL3P36405 182 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 CBX5P45973 191 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 RFX2P48378 723 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 MSMO1Q15800 293 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 GUCA2BQ16661 112 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 TIMM50Q3ZCQ8 353 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 ZNF818PQ6ZRF7 136 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 OR5AP2Q8NGF4 316 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 S100A16Q96FQ6 103 aaKnown RBP7.73□□□□□ -1.17
LDLR-214ENST00000560628 AIFM2Q9BRQ8 373 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 PLEKHA3Q9HB20 300 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 IFT46Q9NQC8 304 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 ZC4H2Q9NQZ6 224 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 BET1LQ9NYM9 111 aa7.73□□□□□ -1.17
LDLR-214ENST00000560628 UPK2O00526 184 aa7.72□□□□□ -1.17
LDLR-214ENST00000560628 RBFOX2O43251 390 aaKnown RBP eCLIP7.72□□□□□ -1.17
LDLR-214ENST00000560628 S1PR2O95136 353 aa7.72□□□□□ -1.17
LDLR-214ENST00000560628 DHFRP00374 187 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms