RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TEX43Q6ZNM6 134 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 TMEM186Q96B77 213 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 PLPPR2Q96GM1 343 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 C5orf30Q96GV9 206 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 P2RX4Q99571 388 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 TMEM242Q9NWH2 141 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 NAT8Q9UHE5 227 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 SVILO95425 2214 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 IGHV3-43A0A0B4J1X8 118 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 LRP5LA4QPB2 252 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 LAMTOR5O43504 91 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 IGHV3-43DP0DP04 118 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 EGR1P18146 543 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 RPL23P62829 140 aaKnown RBP9.48□□□□□ -0.89
CUX1-218ENST00000560541 BSXQ3C1V8 233 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 ATOH7Q8N100 152 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 OR1N2Q8NGR9 330 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 SARAFQ96BY9 339 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 PARLQ9H300 379 aa9.48□□□□□ -0.89
CUX1-218ENST00000560541 NPIPB11E5RHQ5 1161 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 GALR1P47211 349 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 SLAQ13239 276 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 FFAR4Q5NUL3 377 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 TMEM14EPQ6UXP3 125 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 OR10G9Q8NGN4 311 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 OR10G7Q8NGN6 311 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 YLPM1P49750 1951 aaKnown RBP9.47□□□□□ -0.89
CUX1-218ENST00000560541 TRAV26-1A0A087WT03 109 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 C17orf98A8MV24 154 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 DEFB108AA8MXU0 73 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 H7BYZ3 331 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 LGALS7P47929 136 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 PSMB3P49720 205 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 MEOX1P50221 254 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 LTC4SQ16873 150 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 AMMECR1LQ6DCA0 310 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 RFESDQ8TAC1 157 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 CMTM2Q8TAZ6 248 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 OR5B12Q96R08 314 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 LAMA5O15230 3695 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 C12orf77C9JDV5 145 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 PAGE4O60829 102 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 HYPMO75409 117 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 KBTBD11O94819 623 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 PDLIM4P50479 330 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 SUMO1P63165 101 aaKnown RBP9.47□□□□□ -0.89
CUX1-218ENST00000560541 CYP2G1PQ6ZSU1 146 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 MOB1BQ7L9L4 216 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 NIT1Q86X76 327 aa9.47□□□□□ -0.89
CUX1-218ENST00000560541 A0A1W2PNU3 283 aaPredicted RBP9.46□□□□□ -0.89
CUX1-218ENST00000560541 CORTO00230 105 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 SH2D1BO14796 132 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 LYZL6O75951 148 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 HAND1O96004 215 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 CRYAAP02489 173 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 PFN1P07737 140 aaKnown RBP9.46□□□□□ -0.89
CUX1-218ENST00000560541 MC5RP33032 325 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 PPP1CBP62140 327 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 GCSAMLQ5JQS6 135 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 SLC25A40Q8TBP6 338 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 FZR1Q9UM11 496 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 WIPI2Q9Y4P8 454 aa9.46□□□□□ -0.89
CUX1-218ENST00000560541 PIGBOS1A0A0B4J2F0 54 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 C1QTNF9BB2RNN3 333 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 OR7C2O60412 319 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 GABRA2P47869 451 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 FAM3BP58499 235 aaPredicted RBP9.46□□□□□ -0.9
CUX1-218ENST00000560541 ERVK11-1P61568 191 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 SMAGPQ0VAQ4 97 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 TBC1D28Q2M2D7 210 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 ATP1A1-AS1Q5TC04 95 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 OR10W1Q8NGF6 305 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 OR51G1Q8NGK1 321 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 CTDSP1Q9GZU7 261 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 GP6Q9HCN6 339 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 OBP2BQ9NPH6 170 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 MBNL3Q9NUK0 354 aaKnown RBP9.46□□□□□ -0.9
CUX1-218ENST00000560541 KCNIP1Q9NZI2 227 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 UQCR10Q9UDW1 63 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 POLDIP2Q9Y2S7 368 aa9.46□□□□□ -0.9
CUX1-218ENST00000560541 OR2T8A6NH00 312 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 SLC25A17O43808 307 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 CRYBA4P53673 196 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 BRWD1-AS2P59051 145 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 SHISA2Q6UWI4 295 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 ZNF645Q8N7E2 425 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 GALMQ96C23 342 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 STARD4Q96DR4 205 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 MANBALQ9NQG1 85 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 ABI3Q9P2A4 366 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 MAP1BP46821 2468 aaKnown RBP9.45□□□□□ -0.9
CUX1-218ENST00000560541 LRRC30A6NM36 301 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 HBZP02008 142 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 SSTR5P35346 364 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 Q6ZR03 302 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 OR10P1Q8NGE3 313 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 SAMD10Q9BYL1 202 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 CHODLQ9H9P2 273 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 ZNF586Q9NXT0 402 aa9.45□□□□□ -0.9
CUX1-218ENST00000560541 RNF114Q9Y508 228 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms