RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 AADACL3Q5VUY0 350 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ZNF660Q6AZW8 331 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 FAAP20Q6NZ36 180 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ERASQ7Z444 233 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 H1FOOQ8IZA3 346 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 LGI3Q8N145 548 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ZCCHC24Q8N2G6 241 aaKnown RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 C12orf45Q8N5I9 185 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 C8orf31Q8N9H6 132 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 ZNRF1Q8ND25 227 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 MARCH1Q8TCQ1 289 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 CD300LFQ8TDQ1 290 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 MRGPRDQ8TDS7 321 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 PHLDA1Q8WV24 401 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 MITD1Q8WV92 249 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 RTN4IP1Q8WWV3 396 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 IL1F10Q8WWZ1 152 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 MAFIPQ8WZ33 124 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 DYRK2Q92630 601 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 TNFRSF14Q92956 283 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 GALNT14Q96FL9 552 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 COQ2Q96H96 371 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ADTRPQ96IZ2 230 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ZNF714Q96N38 554 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 SLC25A33Q9BSK2 321 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 RANBP3Q9H6Z4 567 aaPredicted RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 PLEKHF2Q9H8W4 249 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 PATZ1Q9HBE1 687 aaKnown RBP4.17□□□□□ -1.74
LDLR-209ENST00000558528 IDI2-AS1Q9NZ38 188 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 GNG12Q9UBI6 72 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 ZNF221Q9UK13 617 aa4.17□□□□□ -1.74
LDLR-209ENST00000558528 GTF3C1Q12789 2109 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 ARHGAP21Q5T5U3 1957 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 CACNA1CQ13936 2221 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 IGKV1D-8A0A087WSZ0 117 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 C9orf170A2RU37 121 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 RNF222A6NCQ9 220 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 CRYM-AS1A6NIL9 109 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 C12orf77C9JDV5 145 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 H3BTX0 84 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 FOXH1O75593 365 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 RP2O75695 350 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 SERPINE2P07093 398 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 AADACP22760 399 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 NFYAP23511 347 aaPredicted RBP4.16□□□□□ -1.74
LDLR-209ENST00000558528 KIR2DS2P43631 304 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 ARHGDIBP52566 201 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 FXYD4P59646 89 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 GNB2P62879 340 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 HNF4GQ14541 408 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 MORN2Q502X0 79 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 SPRNQ5BIV9 151 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 FAM201AQ5SY85 155 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 CLEC2AQ6UVW9 174 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 GSG1LQ6UXU4 331 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 HEPN1Q6WQI6 88 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 ZNF66Q6ZN08 573 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 C1QL4Q86Z23 238 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 ZNF645Q8N7E2 425 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 OR13A1Q8NGR1 328 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 C8orf46Q8TAG6 207 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 SECTM1Q8WVN6 248 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 TMEM37Q8WXS4 190 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 H1FXQ92522 213 aaKnown RBP4.16□□□□□ -1.74
LDLR-209ENST00000558528 IL22RA2Q969J5 263 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 TOMM40LQ969M1 308 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 HYLS1Q96M11 299 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 HSD17B10Q99714 261 aaKnown RBP4.16□□□□□ -1.74
LDLR-209ENST00000558528 SPIN2AQ99865 258 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 SPIN2BQ9BPZ2 258 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 RTBDNQ9BSG5 229 aaPredicted RBP4.16□□□□□ -1.74
LDLR-209ENST00000558528 DCTN5Q9BTE1 182 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 NAA60Q9H7X0 242 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 RAB18Q9NP72 206 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 CALYQ9NYX4 217 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 COMMD9Q9P000 198 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 FLVCR2Q9UPI3 526 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 VSIG4Q9Y279 399 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 PRELID3BQ9Y3B1 194 aa4.16□□□□□ -1.74
LDLR-209ENST00000558528 NCOA6Q14686 2063 aaPredicted RBP4.16□□□□□ -1.74
LDLR-209ENST00000558528 ZANQ9Y493 2812 aa4.15□□□□□ -1.74
LDLR-209ENST00000558528 PPIAL4CA0A0B4J2A2 164 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 C3orf85A0A1B0GTC6 90 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 A0A1B0GVG6 124 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 H0Y980 276 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 C15orf65H3BRN8 121 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 M0R1W7 72 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 TOR1AO14656 332 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 RAB29O14966 203 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 ENSAO43768 121 aaKnown RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 PGLYRP1O75594 196 aaPredicted RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 RLN2P04090 185 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 GIPP09681 153 aaPredicted RBP4.15□□□□□ -1.75
LDLR-209ENST00000558528 OR8U9P0C7N5 309 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 PET100P0DJ07 73 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 SULT1A3P0DMM9 295 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 SULT1A4P0DMN0 295 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 PPIAL4GP0DN37 164 aa4.15□□□□□ -1.75
LDLR-209ENST00000558528 CGB3P0DN86 165 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms