RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 COL27A1Q8IZC6 1860 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-232ENST00000557487 FNDC10F2Z333 226 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 TNFSF13O75888 250 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 AREGP15514 252 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 RHOBP62745 196 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 ZNF90Q03938 601 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 Q0VG73 95 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 RAB31Q13636 194 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 C3AR1Q16581 482 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 PRSS8Q16651 343 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 TEX43Q6ZNM6 134 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 ZNF114Q8NC26 417 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 MGST2Q99735 147 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 HEYLQ9NQ87 328 aaPredicted RBP13.52□□□□□ -0.24
SHMT2-232ENST00000557487 PLA2G3Q9NZ20 509 aa13.52□□□□□ -0.24
SHMT2-232ENST00000557487 TRGV10A0A0A0MS01 117 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 ZNF705FA8MVS1 300 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-232ENST00000557487 C15orf65H3BRN8 121 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 YPEL1O60688 119 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 CELA3BP08861 270 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 ZNF705DP0CH99 300 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-232ENST00000557487 ZNF705BP0CI00 300 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-232ENST00000557487 CD46P15529 392 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 EGR1P18146 543 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 RPS16P62249 146 aaKnown RBP13.52□□□□□ -0.25
SHMT2-232ENST00000557487 ALKBH6Q3KRA9 238 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 GCSAMLQ5JQS6 135 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 C1orf174Q8IYL3 243 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 OR13A1Q8NGR1 328 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 CORO2AQ92828 525 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 YPEL2Q96QA6 119 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 TBX15Q96SF7 602 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 SFXN3Q9BWM7 321 aa13.52□□□□□ -0.25
SHMT2-232ENST00000557487 LSM4Q9Y4Z0 139 aaKnown RBP13.52□□□□□ -0.25
SHMT2-232ENST00000557487 TRBV20OR9-2A0A075B6H5 130 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 CRYABP02511 175 aaKnown RBP13.51□□□□□ -0.25
SHMT2-232ENST00000557487 CRISP2P16562 243 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 GCHFRP30047 84 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 TMEM183BQ1AE95 376 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 SPINK9Q5DT21 86 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 TMEM164Q5U3C3 297 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 WDR82Q6UXN9 313 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 LINC00696Q6ZRV3 163 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 MYPOPQ86VE0 399 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-232ENST00000557487 OCC1Q8TAD7 63 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 MS4A5Q9H3V2 200 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 PATZ1Q9HBE1 687 aaKnown RBP13.51□□□□□ -0.25
SHMT2-232ENST00000557487 CBLN4Q9NTU7 201 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 TRGV5A0A0B4J1U4 118 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 SCO2A0A1W2PP80 73 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 C9orf172C9J069 976 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 WNT9BO14905 357 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 MT-ND6P03923 174 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 DEFA4P12838 97 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 SSTR5P35346 364 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 TNFSF10P50591 281 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 CR1LQ2VPA4 569 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 FAM90A1Q86YD7 464 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 PPP1R35Q8TAP8 253 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 FER1L6-AS2Q96M78 137 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 MIEN1Q9BRT3 115 aa13.51□□□□□ -0.25
SHMT2-232ENST00000557487 ITGB1BP1O14713 200 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 FCGR3BO75015 233 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 OR10J4P0C629 311 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 IGHV1-2P23083 117 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 MPV17P39210 176 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 RPL29P47914 159 aaKnown RBP13.5□□□□□ -0.25
SHMT2-232ENST00000557487 LGALS4P56470 323 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 MIC13Q5XKP0 118 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 TMEM68Q96MH6 324 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 GNB1LQ9BYB4 327 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 MRPL18Q9H0U6 180 aaKnown RBP13.5□□□□□ -0.25
SHMT2-232ENST00000557487 OPN3Q9H1Y3 402 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-232ENST00000557487 RAB9BQ9NP90 201 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 PPP1R14DQ9NXH3 145 aa13.5□□□□□ -0.25
SHMT2-232ENST00000557487 SLC25A10Q9UBX3 287 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-232ENST00000557487 SPTBN4Q9H254 2564 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 RELBQ01201 579 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 RPEL1Q2QD12 228 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 WDR73Q6P4I2 378 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 TEPPQ6URK8 271 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 Q6ZR03 302 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 C1orf162Q8NEQ5 155 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 AURKAIP1Q9NWT8 199 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 A0A1B0GWJ7 208 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 RRHO14718 337 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 NUPR1O60356 82 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 RPLP1P05386 114 aaKnown RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 IL6RP08887 468 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 RPL31P62899 125 aaKnown RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 GAGE1Q13065 139 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 MORN2Q502X0 79 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 FAM53AQ6NSI3 398 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 ZNF826PQ6ZT77 177 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 TMPRSS7Q7RTY8 843 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 OR5AU1Q8NGC0 362 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 S1PR3Q99500 378 aa13.49□□□□□ -0.25
SHMT2-232ENST00000557487 YTHDF2Q9Y5A9 579 aaKnown RBP13.49□□□□□ -0.25
SHMT2-232ENST00000557487 DCHS1Q96JQ0 3298 aa13.48□□□□□ -0.25
SHMT2-232ENST00000557487 IGHV3-43A0A0B4J1X8 118 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms