RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 DAPK2Q9UIK4 370 aa8.38□□□□□ -1.07
CCDC88C-213ENST00000557455 ANXA10Q9UJ72 324 aa8.38□□□□□ -1.07
CCDC88C-213ENST00000557455 FBXL7Q9UJT9 491 aa8.38□□□□□ -1.07
CCDC88C-213ENST00000557455 ZNF785A8K8V0 405 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 NPIPB5A8MRT5 1133 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 TEX22C9J3V5 150 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 MRPS14O60783 128 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 GGCTO75223 188 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 HLA-AP01891 365 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 PSMB9P28065 219 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 MAS1LP35410 378 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 RPL27AP46776 148 aaKnown RBP8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 GUCA2BQ16661 112 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 DEFB114Q30KQ6 69 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 UBE2UQ5VVX9 321 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 ZNF66Q6ZN08 573 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 TPRA1Q86W33 373 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 MFSD4AQ8N468 514 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 TMEM167AQ8TBQ9 72 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 SLC2A9Q9NRM0 540 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 TAS2R8Q9NYW2 309 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 DMRT1Q9Y5R6 373 aa8.37□□□□□ -1.07
CCDC88C-213ENST00000557455 EPPK1P58107 5090 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 C2orf70A6NJV1 201 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 E7EUB6 86 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 LGALS9O00182 355 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 SSX5O60225 188 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 OR2C1O95371 312 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 DHFRP00374 187 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 HRASP01112 189 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 IGHV3-23P01764 117 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 IL6RP08887 468 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 CD7P09564 240 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 ZNF735P0CB33 412 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 FOLR2P14207 255 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 KIR2DS2P43631 304 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 ARPC4P59998 168 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 EIF4EBP1Q13541 118 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 SFXN4Q6P4A7 337 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 LINC00322Q6ZN03 302 aaPredicted RBP8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 C19orf35Q6ZS72 473 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 SSX9Q7RTT3 188 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 PUSL1Q8N0Z8 303 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 DEFB125Q8N687 156 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 LGALS14Q8TCE9 139 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 HIPK2Q9H2X6 1198 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 RETNQ9HD89 108 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 RHBDL2Q9NX52 303 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 TECRQ9NZ01 308 aaKnown RBP8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 SSR3Q9UNL2 185 aa8.36□□□□□ -1.07
CCDC88C-213ENST00000557455 HYDINQ4G0P3 5121 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 OR11H12B2RN74 326 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 TNFSF12O43508 249 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 NDUFB8O95169 186 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 TNFAIP8O95379 198 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 CRYGCP07315 174 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 AREGP15514 252 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 EDN2P20800 178 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 PSMB6P28072 239 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 ARL3P36405 182 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 BRWD1-AS2P59051 145 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 RPL8P62917 257 aaKnown RBP8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 CLEC19AQ6UXS0 136 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 GPHB5Q86YW7 130 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 SPARTQ8N0X7 666 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 BEST4Q8NFU0 473 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 IL17DQ8TAD2 202 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 SECTM1Q8WVN6 248 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 FCGR1BQ92637 280 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 EEF1AKMT3Q96AZ1 226 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 WDR89Q96FK6 387 aaPredicted RBP8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 FANCD2OSQ96PS1 177 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 GPHA2Q96T91 129 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 FAM110AQ9BQ89 295 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 AIFM2Q9BRQ8 373 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 SRD5A3Q9H8P0 318 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 ZC4H2Q9NQZ6 224 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 S4R3C0 116 aa8.35□□□□□ -1.07
CCDC88C-213ENST00000557455 A0A1B0GW64 132 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 ZNF320A2RRD8 509 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 RBMY1BA6NDE4 496 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 RBMY1EA6NEQ0 496 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 RBMY1DP0C7P1 496 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 PTHLHP12272 177 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 DEFA4P12838 97 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 HIST1H1BP16401 226 aaKnown RBP8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 HLA-GP17693 338 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 CBLN1P23435 193 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 FCGR2CP31995 323 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 SDC2P34741 201 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 MXD1Q05195 221 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 MSMO1Q15800 293 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 FAM106AQ4KMX7 169 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 SLC16A13Q7RTY0 426 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 SPAG16Q8N0X2 631 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 CCDC140Q96MF4 163 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 WFDC10AQ9H1F0 79 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 HRASLSQ9HDD0 168 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 CCL28Q9NRJ3 127 aa8.34□□□□□ -1.07
CCDC88C-213ENST00000557455 TRAV18A0A075B6X5 111 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms