RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 EGR2P11161 476 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-227ENST00000557269 MYOD1P15172 320 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 VAMP1P23763 118 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 CX3CL1P78423 397 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 DCTN2Q13561 401 aaKnown RBP10.12□□□□□ -0.79
SHMT2-227ENST00000557269 TRIM16LQ309B1 348 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 DMBX1Q8NFW5 382 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 OR52B4Q8NGK2 314 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 TMEM167AQ8TBQ9 72 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 TMEM56Q96MV1 263 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 NOL4LQ96MY1 436 aaPredicted RBP10.12□□□□□ -0.79
SHMT2-227ENST00000557269 OR2A7Q96R45 310 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 PALMDQ9NP74 551 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 LINC00527Q9UJ94 153 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 KCNIP3Q9Y2W7 256 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 NUBP2Q9Y5Y2 271 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 TMEM56-RWDD3S4R434 201 aa10.12□□□□□ -0.79
SHMT2-227ENST00000557269 A0A0G2JRQ6 117 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 UPK2O00526 184 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 B3GALNT1O75752 331 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 P0C879 139 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 MECP2P51608 486 aaKnown RBP10.11□□□□□ -0.79
SHMT2-227ENST00000557269 GNB1P62873 340 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 DHRS2Q13268 280 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 C10orf55Q5SWW7 151 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 TMEM268Q5VZI3 342 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 SLC35E3Q7Z769 313 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 OR4F5Q8NH21 305 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 CASTOR1Q8WTX7 329 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 MDFIQ99750 246 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 SEC22CQ9BRL7 303 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 ALX4Q9H161 411 aaPredicted RBP10.11□□□□□ -0.79
SHMT2-227ENST00000557269 OR51J1Q9H342 316 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 BET1LQ9NYM9 111 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 NSG2Q9Y328 171 aa10.11□□□□□ -0.79
SHMT2-227ENST00000557269 CLPSL1A2RUU4 121 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 DBX1A6NMT0 343 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 E7EUB6 86 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 ATP6V0E1O15342 81 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 HLA-AP01891 365 aaKnown RBP10.1□□□□□ -0.79
SHMT2-227ENST00000557269 UBE2MP61081 183 aaKnown RBP10.1□□□□□ -0.79
SHMT2-227ENST00000557269 ERVK-16P61578 105 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 FXYD3Q14802 87 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 C4orf46Q504U0 113 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 ZNF562Q6V9R5 426 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 Q6ZRM9 215 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 LYZL2Q7Z4W2 148 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 LYG2Q86SG7 212 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 ZNF695Q8IW36 515 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 SLC35G3Q8N808 338 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 OR2T6Q8NHC8 308 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 TMEM158Q8WZ71 300 aa10.1□□□□□ -0.79
SHMT2-227ENST00000557269 RBPMSQ93062 196 aaKnown RBP10.1□□□□□ -0.79
SHMT2-227ENST00000557269 FAM103A1Q9BTL3 118 aaKnown RBP10.1□□□□□ -0.79
SHMT2-227ENST00000557269 ATRQ13535 2644 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 PLXNB1O43157 2135 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 A0A0B4J293 547 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 A0A1B0GW64 132 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 CGB1A6NKQ9 187 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 G3V318 75 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 OPN1MWP04001 364 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 OPN1MW2P0DN77 364 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 OPN1MW3P0DN78 364 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 VDAC2P45880 294 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-227ENST00000557269 PROK1P58294 105 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 KRTAP10-3P60369 221 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 TNXAQ16473 311 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 AWAT1Q58HT5 328 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 ARSJQ5FYB0 599 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-227ENST00000557269 HIST2H2BDQ6DRA6 164 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 PLET1Q6UQ28 207 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 C10orf99Q6UWK7 81 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 H2BFWTQ7Z2G1 175 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 LGI3Q8N145 548 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 OR4A5Q8NH83 315 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 GRPEL2Q8TAA5 225 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 VSTM2AQ8TAG5 236 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 GPR146Q96CH1 333 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 AIFM2Q9BRQ8 373 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 MARVELD1Q9BSK0 173 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 WNT10AQ9GZT5 417 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 PARP11Q9NR21 331 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 RNF114Q9Y508 228 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 WSB1Q9Y6I7 421 aa10.09□□□□□ -0.79
SHMT2-227ENST00000557269 INMT-MINDY4F8WBC2 141 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 HAX1O00165 279 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 CNIH1O95406 144 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 PTTG1O95997 202 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 IGF1P05019 195 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 ANXA3P12429 323 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 HLA-GP17693 338 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 COMPP49747 757 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-227ENST00000557269 AKR1C2P52895 323 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 OR2B8PP59922 312 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 RPL8P62917 257 aaKnown RBP10.08□□□□□ -0.8
SHMT2-227ENST00000557269 C19orf54Q5BKX5 351 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 ASPHD1Q5U4P2 390 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 MMD2Q8IY49 270 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 CADM3Q8N126 398 aa10.08□□□□□ -0.8
SHMT2-227ENST00000557269 LRTM2Q8N967 370 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms