RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 IGLV3-12A0A075B6K2 115 aa9.8□□□□□ -0.84
SYNE2-208ENST00000553289 GDF9O60383 454 aa9.8□□□□□ -0.84
SYNE2-208ENST00000553289 NPIPB3Q92617 1050 aa9.8□□□□□ -0.84
SYNE2-208ENST00000553289 RCC1LQ96I51 464 aaKnown RBP9.8□□□□□ -0.84
SYNE2-208ENST00000553289 GPHA2Q96T91 129 aa9.8□□□□□ -0.84
SYNE2-208ENST00000553289 NPCDR1Q9BY65 106 aa9.8□□□□□ -0.84
SYNE2-208ENST00000553289 FOXJ2Q9P0K8 574 aa9.8□□□□□ -0.84
SYNE2-208ENST00000553289 C12orf77C9JDV5 145 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 ZNF324O75467 553 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-208ENST00000553289 NPPCP23582 126 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 MEF2CQ06413 473 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-208ENST00000553289 FXYD3Q14802 87 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 C2orf83Q53S99 150 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 C1QTNF12Q5T7M4 302 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 SMIM12Q96EX1 92 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 REPIN1Q9BWE0 567 aaKnown RBP9.79□□□□□ -0.84
SYNE2-208ENST00000553289 ZIC3O60481 467 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 NUDT3O95989 172 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 IL6RP08887 468 aaPredicted RBP9.79□□□□□ -0.84
SYNE2-208ENST00000553289 RNF224P0DH78 156 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 RTN4RL2Q86UN3 420 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 RAX2Q96IS3 184 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 DMRT1Q9Y5R6 373 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 CCDC88CQ9P219 2028 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 TRAV9-1A0A075B6T8 112 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 PAPPA-AS1Q5QFB9 102 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 AMMECR1LQ6DCA0 310 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 MUC15Q8N387 334 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 RPRMQ9NS64 109 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 H3BVH4 76 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 DDTP30046 118 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 EFNB1P98172 346 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 C1QL2Q7Z5L3 287 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 IMMP1LQ96LU5 166 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 IFI27L2Q9H2X8 130 aa9.79□□□□□ -0.84
SYNE2-208ENST00000553289 TGFBR3LH3BV60 316 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 RAMP1O60894 148 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 RFPL3SP0C7P2 107 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 ARF6P62330 175 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 HBBP68871 147 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 RALGAPA2Q2PPJ7 1873 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 PQLC2LA1A4F0 135 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 GAGE10A6NGK3 116 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 ZNHIT1O43257 154 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 RRN3P1Q2M238 152 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 AICDAQ9GZX7 198 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 ZNF256Q9Y2P7 627 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-208ENST00000553289 ANKRD36A6QL64 1941 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 ZNF646O15015 1829 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-208ENST00000553289 UBE2L6O14933 153 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 KLRB1Q12918 225 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 CENPWQ5EE01 88 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 OR4A47Q6IF82 309 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 MRPL14Q6P1L8 145 aaKnown RBP9.78□□□□□ -0.84
SYNE2-208ENST00000553289 RTBDNQ9BSG5 229 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-208ENST00000553289 SOX21Q9Y651 276 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-208ENST00000553289 AUP1Q9Y679 476 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 ZNF236Q9UL36 1845 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 IGLV3-32A0A0A0MS00 114 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 A0A1B0GTI1 187 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 TCTAP57738 103 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 HERPUD1Q15011 391 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 CSRP2Q16527 193 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 RNFT1Q5M7Z0 435 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 TMEM183AQ8IXX5 376 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 PNKDQ8N490 385 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 CACNG8Q8WXS5 425 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 LEAP2Q969E1 77 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 TMEM106BQ9NUM4 274 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 CABIN1Q9Y6J0 2220 aa9.78□□□□□ -0.84
SYNE2-208ENST00000553289 IGKV1D-43A0A0B4J1Z2 117 aa9.77□□□□□ -0.84
SYNE2-208ENST00000553289 LNP1A1A4G5 178 aa9.77□□□□□ -0.84
SYNE2-208ENST00000553289 IQCF6A8MYZ5 107 aa9.77□□□□□ -0.84
SYNE2-208ENST00000553289 CECR9P0C854 216 aa9.77□□□□□ -0.84
SYNE2-208ENST00000553289 LINC00518Q8N0U6 118 aa9.77□□□□□ -0.84
SYNE2-208ENST00000553289 GTF3AQ92664 365 aaKnown RBP9.77□□□□□ -0.84
SYNE2-208ENST00000553289 SIGLEC12Q96PQ1 595 aa9.77□□□□□ -0.84
SYNE2-208ENST00000553289 A0A087WWC5 75 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 SNRPCP09234 159 aaKnown RBP9.77□□□□□ -0.85
SYNE2-208ENST00000553289 FHITP49789 147 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 FDCSPQ8NFU4 85 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 PRR19A6NJB7 356 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 LINC00305Q7Z4B0 112 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 CLDND2Q8NHS1 167 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 GPR61Q9BZJ8 451 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 A8MXK9 166 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 TCF21O43680 179 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 TFPI2P48307 235 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 PSMG4Q5JS54 123 aa9.77□□□□□ -0.85
SYNE2-208ENST00000553289 NEU4Q8WWR8 484 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-208ENST00000553289 LOC102723996A0A087X1L8 192 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 KBTBD11-OT1A0A1B0GTJ5 212 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 SIGLEC5O15389 551 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 GPX1P07203 203 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 CCL1P22362 96 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 GOLT1AQ6ZVE7 132 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 VKORC1L1Q8N0U8 176 aa9.76□□□□□ -0.85
SYNE2-208ENST00000553289 RNASEH2CQ8TDP1 164 aaKnown RBP9.76□□□□□ -0.85
SYNE2-208ENST00000553289 MRPL13Q9BYD1 178 aaKnown RBP9.76□□□□□ -0.85
SYNE2-208ENST00000553289 PLXNA1Q9UIW2 1896 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms