RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 GGNBP1Q5YKI7 109 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 OR4A47Q6IF82 309 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 Q6ZRM9 215 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 OR5M8Q8NGP6 311 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 GPR146Q96CH1 333 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 TMEM14BQ9NUH8 114 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 ZNF257Q9Y2Q1 563 aa7.63□□□□□ -1.19
LIMA1-211ENST00000552338 SETXQ7Z333 2677 aaKnown RBP7.63□□□□□ -1.19
LIMA1-211ENST00000552338 FN1P02751 2386 aaKnown RBP7.62□□□□□ -1.19
LIMA1-211ENST00000552338 INAFM1C9JVW0 142 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 ADAP1O75689 374 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 KRASP01116 189 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 IFNA21P01568 189 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 HLA-DRB1P01911 266 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 AMY1AP04745 511 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 PAX6P26367 422 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 G6PCP35575 357 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 HILS1P60008 231 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 ERVK-16P61578 105 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 C2orf68Q2NKX9 166 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 OR2B11Q5JQS5 317 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 ZNF562Q6V9R5 426 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 H2BFWTQ7Z2G1 175 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 PPP1R27Q86WC6 154 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 MMD2Q8IY49 270 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 C5orf56Q8N8D9 126 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 OR11H7Q8NGC8 314 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 OR4D5Q8NGN0 318 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 RRNAD1Q96FB5 475 aaKnown RBP7.62□□□□□ -1.19
LIMA1-211ENST00000552338 C2orf50Q96LR7 162 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 SPIN2AQ99865 258 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 SPIN2BQ9BPZ2 258 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 SRSF8Q9BRL6 282 aaKnown RBP7.62□□□□□ -1.19
LIMA1-211ENST00000552338 NMES1Q9C002 83 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 MED28Q9H204 178 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 TMEM140Q9NV12 185 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 FKBP11Q9NYL4 201 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 VPREB3Q9UKI3 123 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 FOXA2Q9Y261 457 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-211ENST00000552338 MOB4Q9Y3A3 225 aa7.62□□□□□ -1.19
LIMA1-211ENST00000552338 MDFIC2A0A1B0GVS7 189 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 C15orf61A6NNL5 157 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 MPTX1A8MV57 137 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 LY86O95711 162 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 IGHV4-59P01825 116 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 OR9G9P0C7N8 305 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 CNTFRP26992 372 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 BCAP31P51572 246 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 H2BFSP57053 126 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 SSBP2P81877 361 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-211ENST00000552338 SMCO1Q147U7 214 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 MMDQ15546 238 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 PRSS8Q16651 343 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 KLK9Q2XQG4 91 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 THOC7Q6I9Y2 204 aaKnown RBP7.61□□□□□ -1.19
LIMA1-211ENST00000552338 LIN54Q6MZP7 749 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 GSG1LQ6UXU4 331 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 IL17RELQ6ZVW7 336 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 Q8N2B8 174 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 SIGLECL1Q8N7X8 197 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 DMBX1Q8NFW5 382 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 OR5B3Q8NH48 314 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 C22orf15Q8WYQ4 148 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 OR10C1Q96KK4 312 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 FYTTD1Q96QD9 318 aaKnown RBP7.61□□□□□ -1.19
LIMA1-211ENST00000552338 SLC25A33Q9BSK2 321 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-211ENST00000552338 PRR13Q9NZ81 148 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 KIAA1456Q9P272 454 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 HSPB7Q9UBY9 170 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 KLK9Q9UKQ9 250 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 PRNDQ9UKY0 176 aa7.61□□□□□ -1.19
LIMA1-211ENST00000552338 A0A1B0GVG6 124 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 BTBD17A6NE02 478 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 HOXA3O43365 443 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 SSNA1O43805 119 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 SLC25A17O43808 307 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 IGHG2P01859 326 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 RNASE1P07998 156 aaKnown RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 HOXB5P09067 269 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 CXCL3P19876 107 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 CD24P25063 80 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 AKR1C2P52895 323 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 HSPE1P61604 102 aaKnown RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 RPL8P62917 257 aaKnown RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 HES1Q14469 280 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 FCN2Q15485 313 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 VKORC1L1Q8N0U8 176 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 ZBTB8BQ8NAP8 495 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 ZNF418Q8TF45 676 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 TMEM68Q96MH6 324 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 JMJD8Q96S16 334 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 FBXL15Q9H469 300 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 RANBP3Q9H6Z4 567 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 ZNF430Q9H8G1 570 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 NDUFA4L2Q9NRX3 87 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 ZFP57Q9NU63 452 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 MGAT4CQ9UBM8 478 aa7.6□□□□□ -1.19
LIMA1-211ENST00000552338 METTL1Q9UBP6 276 aaKnown RBP7.6□□□□□ -1.19
LIMA1-211ENST00000552338 IGHV7-81A0A0B4J1V7 117 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms