RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 SPATA2Q9UM82 520 aa13.17□□□□□ -0.3
CHMP1A-205ENST00000548650 SSR3Q9UNL2 185 aa13.17□□□□□ -0.3
CHMP1A-205ENST00000548650 NPIPB5A8MRT5 1133 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 PPP5D1E7EU14 171 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 E7EUB6 86 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 IL6RP08887 468 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 CLEC2LP0C7M8 214 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 SDC2P34741 201 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 RPL27AP46776 148 aaKnown RBP13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 CD300EQ496F6 205 aaPredicted RBP13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 ZFAND6Q6FIF0 208 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 SLC25A42Q86VD7 318 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 RNF167Q9H6Y7 350 aa13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 GAR1Q9NY12 217 aaKnown RBP13.16□□□□□ -0.3
CHMP1A-205ENST00000548650 ZNF735P0CB33 412 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 EDN2P20800 178 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 SCAND1P57086 179 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 FAM209BQ5JX69 171 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 ZNF773Q6PK81 442 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 ZNF66Q6ZN08 573 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 LAX1Q8IWV1 398 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 MFSD4AQ8N468 514 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 BEST4Q8NFU0 473 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 OR5H6Q8NGV6 325 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 KCTD12Q96CX2 325 aaKnown RBP13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 CCDC140Q96MF4 163 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 PLEKHA3Q9HB20 300 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 SLC2A9Q9NRM0 540 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 ETV7Q9Y603 341 aa13.15□□□□□ -0.3
CHMP1A-205ENST00000548650 LCE6AA0A183 80 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 C2orf70A6NJV1 201 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 HLA-AP01891 365 aaKnown RBP13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 PTHLHP12272 177 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 AREGP15514 252 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 MAS1LP35410 378 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 ARPC4P59998 168 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 CD81P60033 236 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 MXD1Q05195 221 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 MSMO1Q15800 293 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 LINC00322Q6ZN03 302 aaPredicted RBP13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 GVQW1Q8N7I0 195 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 OR13F1Q8NGS4 319 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 FANCD2OSQ96PS1 177 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 FYTTD1Q96QD9 318 aaKnown RBP13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 YTHDF1Q9BYJ9 559 aaKnown RBP13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 TUBA4BQ9H853 241 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 ZC4H2Q9NQZ6 224 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 FBXL7Q9UJT9 491 aa13.14□□□□□ -0.31
CHMP1A-205ENST00000548650 DNAH1Q9P2D7 4330 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 TRAV18A0A075B6X5 111 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 ZNF785A8K8V0 405 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 TNFSF12O43508 249 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 CRYGCP07315 174 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 MYOD1P15172 320 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 FCGR2CP31995 323 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 KIR2DS2P43631 304 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 KLK9Q2XQG4 91 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 TIMM50Q3ZCQ8 353 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 SSX9Q7RTT3 188 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 HOGA1Q86XE5 327 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 DYNLRB2Q8TF09 96 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 SECTM1Q8WVN6 248 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 WFDC10AQ9H1F0 79 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 RETNQ9HD89 108 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 CCL28Q9NRJ3 127 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 KLK9Q9UKQ9 250 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 CEPT1Q9Y6K0 416 aa13.13□□□□□ -0.31
CHMP1A-205ENST00000548650 A0A0A6YYH2 397 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 DPPA5A6NC42 116 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 A6NJ64 397 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 CGB1A6NKQ9 187 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 LGALS9O00182 355 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 GGCTO75223 188 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 NDUFB8O95169 186 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 HRASP01112 189 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 PPYP01298 95 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 IGHV3-23P01764 117 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 CD7P09564 240 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 CTRB1P17538 263 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 PSMB6P28072 239 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 RPL8P62917 257 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 DEFB114Q30KQ6 69 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 IDNKQ5T6J7 187 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 CTRB2Q6GPI1 263 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 OR4A47Q6IF82 309 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 NEURL2Q9BR09 285 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 BET1LQ9NYM9 111 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 S4R3C0 116 aa13.12□□□□□ -0.31
CHMP1A-205ENST00000548650 LOC100506127A0A0U1RQW1 187 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 A8MWP6 167 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 RBFOX2O43251 390 aaKnown RBP eCLIP13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 OR2C1O95371 312 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 FOLR2P14207 255 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 HLA-GP17693 338 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 ARL3P36405 182 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 SPAG16Q8N0X2 631 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 CACNG8Q8WXS5 425 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 HIPK2Q9H2X6 1198 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 AUNIPQ9H7T9 357 aa13.11□□□□□ -0.31
CHMP1A-205ENST00000548650 SLC2A8Q9NY64 477 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms