RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 ATMQ13315 3056 aa14.82□□□□□ -0.04
VIM-209ENST00000544301 TET2Q6N021 2002 aaPredicted RBP14.82□□□□□ -0.04
VIM-209ENST00000544301 SMCO3A2RU48 225 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 C15orf61A6NNL5 157 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 TMEM250H0YL14 139 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 MMP23AO75900 390 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 RND2P52198 227 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 CCL8P80075 99 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 ZNF674Q2M3X9 581 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 Q8NA96 180 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 SNRNP40Q96DI7 357 aaKnown RBP14.81□□□□□ -0.04
VIM-209ENST00000544301 RHOVQ96L33 236 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 NAT8Q9UHE5 227 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 DYSFO75923 2080 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 TRGV8A0A0C4DH27 118 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 SEC14L6B5MCN3 397 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 CLDN34H7C241 214 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 CDC34P49427 236 aaPredicted RBP14.81□□□□□ -0.04
VIM-209ENST00000544301 GNG10P50151 68 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 TMPRSS3P57727 454 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 ADIPOQQ15848 244 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 OR4A47Q6IF82 309 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 TREML4Q6UXN2 200 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 ADTRPQ96IZ2 230 aa14.81□□□□□ -0.04
VIM-209ENST00000544301 MPDU1O75352 247 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 KBTBD11O94819 623 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 S100A8P05109 93 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 THBDP07204 575 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 OR4A8P0C604 315 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 KIAA0141Q14154 515 aaPredicted RBP14.8□□□□□ -0.04
VIM-209ENST00000544301 GCSAMLQ5JQS6 135 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 CYP2G1PQ6ZSU1 146 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 TMEM14BQ9NUH8 114 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 FOXA2Q9Y261 457 aaPredicted RBP14.8□□□□□ -0.04
VIM-209ENST00000544301 NDUFS6O75380 124 aaKnown RBP14.8□□□□□ -0.04
VIM-209ENST00000544301 TMEM241Q24JQ0 296 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 OR4F5Q8NH21 305 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 ZCCHC14Q8WYQ9 949 aaKnown RBP14.8□□□□□ -0.04
VIM-209ENST00000544301 RPUSD4Q96CM3 377 aaKnown RBP14.8□□□□□ -0.04
VIM-209ENST00000544301 OR4F4Q96R69 305 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 MS4A5Q9H3V2 200 aa14.8□□□□□ -0.04
VIM-209ENST00000544301 RPUSD1Q9UJJ7 312 aaKnown RBP14.8□□□□□ -0.04
VIM-209ENST00000544301 C17orf100A8MU93 164 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 PAGE4O60829 102 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 TNFRSF1AP19438 455 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 MAP1BP46821 2468 aaKnown RBP14.79□□□□□ -0.04
VIM-209ENST00000544301 BSPH1Q075Z2 132 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 TMEM30BQ3MIR4 351 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 GFRALQ6UXV0 394 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 SSX3Q99909 188 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 CTDSP1Q9GZU7 261 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 SH3BGRL2Q9UJC5 107 aa14.79□□□□□ -0.04
VIM-209ENST00000544301 SMG1Q96Q15 3661 aaKnown RBP14.79□□□□□ -0.04
VIM-209ENST00000544301 TRAV38-1A0A0B4J264 116 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 SOX15O60248 233 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 OPRK1P41145 380 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 HSPE1P61604 102 aaKnown RBP14.78□□□□□ -0.04
VIM-209ENST00000544301 ADIRFQ15847 76 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 SLC25A48Q6ZT89 311 aaKnown RBP14.78□□□□□ -0.04
VIM-209ENST00000544301 ZCCHC24Q8N2G6 241 aaKnown RBP14.78□□□□□ -0.04
VIM-209ENST00000544301 MGST2Q99735 147 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 PARLQ9H300 379 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 JKAMPQ9P055 326 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 MUC6Q6W4X9 2439 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 hADV38S2A0JD32 116 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 TMPRSS2O15393 492 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 YIF1AO95070 293 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 NDUFB7P17568 137 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 C1orf87Q8N0U7 546 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 FAM210BQ96KR6 192 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 SSUH2Q9Y2M2 353 aa14.78□□□□□ -0.04
VIM-209ENST00000544301 NKX6-3A6NJ46 265 aa14.77□□□□□ -0.04
VIM-209ENST00000544301 POU2AF1Q16633 256 aa14.77□□□□□ -0.04
VIM-209ENST00000544301 TMEM249Q2WGJ8 235 aa14.77□□□□□ -0.04
VIM-209ENST00000544301 RAB1CQ92928 201 aa14.77□□□□□ -0.04
VIM-209ENST00000544301 GGTLC1Q9BX51 225 aa14.77□□□□□ -0.04
VIM-209ENST00000544301 LINC00312Q9Y6C7 94 aa14.77□□□□□ -0.04
VIM-209ENST00000544301 DMXL2Q8TDJ6 3036 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 HRASP01112 189 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 SMIM6P0DI80 62 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 CT45A6P0DMU7 189 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 CT45A5P0DMU8 189 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 CT45A7P0DMV0 189 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 RPL23P62829 140 aaKnown RBP14.77□□□□□ -0.05
VIM-209ENST00000544301 NEIL1Q96FI4 390 aaPredicted RBP14.77□□□□□ -0.05
VIM-209ENST00000544301 C1orf159Q96HA4 380 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 PATZ1Q9HBE1 687 aaKnown RBP14.77□□□□□ -0.05
VIM-209ENST00000544301 ZNRD1Q9P1U0 126 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 ZNF835Q9Y2P0 537 aa14.77□□□□□ -0.05
VIM-209ENST00000544301 ZGRF1Q86YA3 2104 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 OPN1MWP04001 364 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 OPN1MW2P0DN77 364 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 OPN1MW3P0DN78 364 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 MYOD1P15172 320 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 BSXQ3C1V8 233 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 SLC25A10Q9UBX3 287 aaPredicted RBP14.76□□□□□ -0.05
VIM-209ENST00000544301 PXMP4Q9Y6I8 212 aa14.76□□□□□ -0.05
VIM-209ENST00000544301 A0A1W2PPV4 95 aa14.75□□□□□ -0.05
VIM-209ENST00000544301 C11orf94C9JXX5 98 aa14.75□□□□□ -0.05
VIM-209ENST00000544301 TRGC2P03986 189 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms