RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 IL6RP08887 468 aaPredicted RBP9.64□□□□□ -0.87
DDX55-210ENST00000543016 OR5AC1P0C628 307 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 MECP2P51608 486 aaKnown RBP9.64□□□□□ -0.87
DDX55-210ENST00000543016 RAB25P57735 213 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 CX3CL1P78423 397 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 TMEM267Q0VDI3 215 aaPredicted RBP9.64□□□□□ -0.87
DDX55-210ENST00000543016 OR4A47Q6IF82 309 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 ZNF695Q8IW36 515 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 CHPT1Q8WUD6 406 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 C20orf85Q9H1P6 137 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 OR51J1Q9H342 316 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 FKBP11Q9NYL4 201 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 CACFD1Q9UGQ2 172 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 RNF114Q9Y508 228 aa9.64□□□□□ -0.87
DDX55-210ENST00000543016 DUXBA0A1W2PPF3 345 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 UPK2O00526 184 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 ARPC1BO15143 372 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 SNAPC5O75971 98 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 SFT2D2O95562 160 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 KRASP01116 189 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 CRIP2P52943 208 aaPredicted RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 RPL8P62917 257 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 SUPT4H1P63272 117 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 DCTN2Q13561 401 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 TMEM187Q14656 261 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 SP6Q3SY56 376 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 THOC7Q6I9Y2 204 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 H2BFWTQ7Z2G1 175 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 LGI3Q8N145 548 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 COMMD1Q8N668 190 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 LRTM2Q8N967 370 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 RBPMSQ93062 196 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 RRNAD1Q96FB5 475 aaKnown RBP9.63□□□□□ -0.87
DDX55-210ENST00000543016 SEC22AQ96IW7 307 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 WNT10AQ9GZT5 417 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 SERTAD4Q9NUC0 356 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 TMEM140Q9NV12 185 aa9.63□□□□□ -0.87
DDX55-210ENST00000543016 A0A0B4J2A0 478 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 FCN1O00602 326 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 CNIH1O95406 144 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 PTTG1O95997 202 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 CA2P00918 260 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 H2AFB2P0C5Z0 115 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 OR4E1P0C645 316 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 HLA-GP17693 338 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 VAMP1P23763 118 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 AKR1C2P52895 323 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 PROK1P58294 105 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 SLC35B1P78383 322 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 PPP1R1AQ13522 171 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 FXYD3Q14802 87 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 AKIRIN2Q53H80 203 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 AWAT1Q58HT5 328 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 PLET1Q6UQ28 207 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 Q6ZS46 218 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 SSX9Q7RTT3 188 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 VKORC1L1Q8N0U8 176 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 SGMS2Q8NHU3 365 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 ARPC1AQ92747 370 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 LSM10Q969L4 123 aaKnown RBP9.62□□□□□ -0.87
DDX55-210ENST00000543016 SPIN2AQ99865 258 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 SPIN2BQ9BPZ2 258 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 SRSF8Q9BRL6 282 aaKnown RBP9.62□□□□□ -0.87
DDX55-210ENST00000543016 ZNF430Q9H8G1 570 aaPredicted RBP9.62□□□□□ -0.87
DDX55-210ENST00000543016 NUDT15Q9NV35 164 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 SHPKQ9UHJ6 478 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 PRNDQ9UKY0 176 aa9.62□□□□□ -0.87
DDX55-210ENST00000543016 C9orf170A2RU37 121 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 DUS4LO95620 317 aaKnown RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 IGKV1-39P01597 117 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 HLA-AP01891 365 aaKnown RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 IGKV1D-39P04432 117 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 IL5P05113 134 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 MDKP21741 143 aaPredicted RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 VDAC1P21796 283 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 G6PCP35575 357 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 C4orf46Q504U0 113 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 TMEM268Q5VZI3 342 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 HSD17B13Q7Z5P4 300 aaPredicted RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 NRARPQ7Z6K4 114 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 CENPVQ7Z7K6 275 aaPredicted RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 LYG2Q86SG7 212 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 SELENOHQ8IZQ5 122 aaKnown RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 STPG2Q8N412 459 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 OR5B3Q8NH48 314 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 COQ8AQ8NI60 647 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 RNASE11Q8TAA1 199 aaKnown RBP9.61□□□□□ -0.87
DDX55-210ENST00000543016 CLCC1Q96S66 551 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 HSPB9Q9BQS6 159 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 COMMD5Q9GZQ3 224 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 FLVCR2Q9UPI3 526 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 ZNF257Q9Y2Q1 563 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 TNCP24821 2201 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 COL6A5A8TX70 2615 aa9.61□□□□□ -0.87
DDX55-210ENST00000543016 TRAV6A0A075B6T7 132 aa9.6□□□□□ -0.87
DDX55-210ENST00000543016 TRAV41A0A0B4J266 112 aa9.6□□□□□ -0.87
DDX55-210ENST00000543016 SH2D7A6NKC9 451 aaPredicted RBP9.6□□□□□ -0.87
DDX55-210ENST00000543016 PRAF2O60831 178 aa9.6□□□□□ -0.87
DDX55-210ENST00000543016 P0C879 139 aa9.6□□□□□ -0.87
DDX55-210ENST00000543016 ANXA7P20073 488 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms