RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	EML5	Q05BV3	1969 aa		0.99	□□□□□ -2.25
PRKDC-210	ENST00000541488	CENPE	Q02224	2701 aa		0.99	□□□□□ -2.25
PRKDC-210	ENST00000541488	DSCAML1	Q8TD84	2053 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	COL4A2	P08572	1712 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	RFX7	Q2KHR2	1363 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	MYH13	Q9UKX3	1938 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	IGKV1-12	A0A0C4DH73	117 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	LOC102725191	A0A1B0GVB3	256 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488		B4DEV8	164 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488		F5H5K5	113 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488		K7EQS6	105 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TNFAIP8	O95379	198 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	IGKV1D-12	P01611	117 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	OR4A8	P0C604	315 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	IGHV3-30-3	P0DP02	117 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	NQO1	P15559	274 aa	Known RBP	0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	GADD45A	P24522	165 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	PSMA1	P25786	263 aa	Known RBP	0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	BLVRB	P30043	206 aa	Predicted RBP	0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	GABRA3	P34903	492 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	MAGEA6	P43360	314 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	OR2B6	P58173	313 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	GABARAPL2	P60520	117 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	RAB8A	P61006	207 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TSPAN31	Q12999	210 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TMED1	Q13445	227 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	PDK2	Q15119	407 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	MAPK14	Q16539	360 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	HES3	Q5TGS1	186 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TTC33	Q6PID6	262 aa	Predicted RBP	0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	SDIM1	Q6ZPB5	146 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488		Q6ZSA8	131 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	SLC13A5	Q86YT5	568 aa	Predicted RBP	0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TCAIM	Q8N3R3	496 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	OR4C16	Q8NGL9	310 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	OR11L1	Q8NGX0	322 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	OR51H1	Q8NH63	302 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	OR5AK3P	Q8NH89	298 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	DYNC2LI1	Q8TCX1	351 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TMIGD2	Q96BF3	282 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TAMM41	Q96BW9	452 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	LRRC45	Q96CN5	670 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	ACBD6	Q9BR61	282 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	CHST5	Q9GZS9	411 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	AICDA	Q9GZX7	198 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	GTSF1L	Q9H1H1	148 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	SMDT1	Q9H4I9	107 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TAS2R9	Q9NYW1	312 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	HEY1	Q9Y5J3	304 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	MED13	Q9UHV7	2174 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	NUP98	P52948	1817 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	CD163L1	Q9NR16	1453 aa		0.98	□□□□□ -2.25
PRKDC-210	ENST00000541488	TONSL	Q96HA7	1378 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ANKRD30A	Q9BXX3	1397 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ZNF106	Q9H2Y7	1883 aa	Known RBP	0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	PTPRJ	Q12913	1337 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	IGSF23	A1L1A6	192 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ODF3B	A8MYP8	253 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488		C9J4A7	227 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	HSBP1L1	C9JCN9	74 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488		J3QLI3	93 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488		M0QYV0	167 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	S1PR2	O95136	353 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	GP1BA	P07359	652 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	CPM	P14384	443 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	COIL	P38432	576 aa	Predicted RBP	0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	STC1	P52823	247 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	DLX6	P56179	175 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ZNF117	Q03924	483 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	HTR4	Q13639	388 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	CLEC12B	Q2HXU8	276 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	CENPW	Q5EE01	88 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	EBLN2	Q6P2I7	272 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	SYCE1	Q8N0S2	351 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ANGPTL6	Q8NI99	470 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	OPTN	Q96CV9	577 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	SMIM12	Q96EX1	92 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	CAPZA3	Q96KX2	299 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	DNAJC30	Q96LL9	226 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	MED10	Q9BTT4	135 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	MND1	Q9BWT6	205 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	SLC19A3	Q9BZV2	496 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	TREM1	Q9NP99	234 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ASCL3	Q9NQ33	180 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	LINC00527	Q9UJ94	153 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	CCL26	Q9Y258	94 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ALG5	Q9Y673	324 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ANKRD36C	Q5JPF3	1778 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ANKRD50	Q9ULJ7	1429 aa		0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	NYNRIN	Q9P2P1	1898 aa	Known RBP	0.97	□□□□□ -2.25
PRKDC-210	ENST00000541488	ARHGAP32	A7KAX9	2087 aa		0.96	□□□□□ -2.25
PRKDC-210	ENST00000541488	EIF3A	Q14152	1382 aa	Known RBP	0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	RTL9	Q8NET4	1388 aa		0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	DHRS12	A0PJE2	317 aa		0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	TMEM213	A2RRL7	107 aa		0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	KNCN	A6PVL3	124 aa		0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	LOC730098	B7Z3J9	87 aa		0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	NEMF	O60524	1076 aa		0.96	□□□□□ -2.26
PRKDC-210	ENST00000541488	CRYGD	P07320	174 aa		0.96	□□□□□ -2.26

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms