RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CCR6P51684 374 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 RPL8P62917 257 aaKnown RBP13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 PRSS8Q16651 343 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 ZNF585BQ52M93 769 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 H2BFWTQ7Z2G1 175 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 TMED4Q7Z7H5 227 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 ZNF695Q8IW36 515 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 MRPL41Q8IXM3 137 aaKnown RBP13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 RBPMSQ93062 196 aaKnown RBP13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 SPIN2AQ99865 258 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 SPIN2BQ9BPZ2 258 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 NUBP2Q9Y5Y2 271 aa13.87□□□□□ -0.19
CLSTN3-210ENST00000540931 S1PR2O95136 353 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 OR5AC1P0C628 307 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 CRIP2P52943 208 aaPredicted RBP13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 CX3CL1P78423 397 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 AKIRIN2Q53H80 203 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 AWAT1Q58HT5 328 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 OR4A47Q6IF82 309 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 HSD17B13Q7Z5P4 300 aaPredicted RBP13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 CENPVQ7Z7K6 275 aaPredicted RBP13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 LGI3Q8N145 548 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 TMEM56Q96MV1 263 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 TP53RKQ96S44 253 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 GPHA2Q96T91 129 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 SRSF8Q9BRL6 282 aaKnown RBP13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 SERTAD4Q9NUC0 356 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 PRNDQ9UKY0 176 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 TMEM56-RWDD3S4R434 201 aa13.86□□□□□ -0.19
CLSTN3-210ENST00000540931 IGHV7-81A0A0B4J1V7 117 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 CA2P00918 260 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 KRASP01116 189 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 VSIG10L2P0DP72 767 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 MDKP21741 143 aaPredicted RBP13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 BTCP35070 178 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 AKR1C2P52895 323 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 FXYD3Q14802 87 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 STPG2Q8N412 459 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 DUSP18Q8NEJ0 188 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 SGMS2Q8NHU3 365 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 RNASE11Q8TAA1 199 aaKnown RBP13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 GLYATL2Q8WU03 294 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 ARPC1AQ92747 370 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 COMMD5Q9GZQ3 224 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 WNT10AQ9GZT5 417 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 TMEM140Q9NV12 185 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 TBC1D24Q9ULP9 559 aa13.85□□□□□ -0.19
CLSTN3-210ENST00000540931 UPK2O00526 184 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 IL6RP08887 468 aaPredicted RBP13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 VAMP1P23763 118 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 PROK1P58294 105 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 FBLN7Q53RD9 439 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 PLET1Q6UQ28 207 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 C3orf56Q8N813 242 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 OR4X2Q8NGF9 303 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 OR5B3Q8NH48 314 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 OR4A16Q8NH70 328 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 COQ8AQ8NI60 647 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 LSM10Q969L4 123 aaKnown RBP13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 TMEM230Q96A57 120 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 SEC22AQ96IW7 307 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 C20orf85Q9H1P6 137 aa13.84□□□□□ -0.19
CLSTN3-210ENST00000540931 A0A0B4J2A0 478 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 PSMB11A5LHX3 300 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 SFT2D2O95562 160 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 HLA-GP17693 338 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 MECP2P51608 486 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 DCTN2Q13561 401 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 TMEM187Q14656 261 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 TNXAQ16473 311 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 C4orf46Q504U0 113 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 TEX38Q6PEX7 206 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 SHISA2Q6UWI4 295 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 SSX9Q7RTT3 188 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 LRTM2Q8N967 370 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 ADAD2Q8NCV1 583 aaKnown RBP13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 OR5M8Q8NGP6 311 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 ABHD5Q8WTS1 349 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 WFDC12Q8WWY7 111 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 CLCC1Q96S66 551 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 ZNF747Q9BV97 191 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 ZNF430Q9H8G1 570 aaPredicted RBP13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 PARP11Q9NR21 331 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 SHPKQ9UHJ6 478 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 ZNF257Q9Y2Q1 563 aa13.83□□□□□ -0.2
CLSTN3-210ENST00000540931 H3BUA1 57 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 ARPC1BO15143 372 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 CYB5BO43169 146 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 WIPF1O43516 503 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 PRAF2O60831 178 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 DUS4LO95620 317 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 PTTG1O95997 202 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 DHFRP00374 187 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 HLA-AP01891 365 aaKnown RBP13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 ELANEP08246 267 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 H2AFB2P0C5Z0 115 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 OR4E1P0C645 316 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 G6PCP35575 357 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 ZNF429Q86V71 674 aa13.82□□□□□ -0.2
CLSTN3-210ENST00000540931 KLHDC1Q8N7A1 406 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms