RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HLA-DMAP28067 261 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 RCVRNP35243 200 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 MAS1LP35410 378 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 SLURP1P55000 103 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 TAS2R31P59538 309 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 ZNF45Q02386 682 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 KLK9Q2XQG4 91 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 SNX29P2Q8IUI4 249 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 TTC9CQ8N5M4 171 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 BORCS5Q969J3 196 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 SPIN2AQ99865 258 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 SPIN2BQ9BPZ2 258 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 BCL7BQ9BQE9 202 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 BET1LQ9NYM9 111 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 KLK9Q9UKQ9 250 aa10.92□□□□□ -0.66
USP28-209ENST00000540925 A0A0G2JLM5 398 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 CGB1A6NKQ9 187 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 PGLYRP1O75594 196 aaPredicted RBP10.91□□□□□ -0.66
USP28-209ENST00000540925 HPRT1P00492 218 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 APELAP0DMC3 54 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 INSL3P51460 131 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 TMBIM6P55061 237 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 DGCR2P98153 550 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 CATR1Q13166 79 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 VAX1Q5SQQ9 334 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 OR4A47Q6IF82 309 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 ZNF343Q6P1L6 599 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 OR6F1Q8NGZ6 308 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 OR4A5Q8NH83 315 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 DYNC2LI1Q8TCX1 351 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 RAB2BQ8WUD1 216 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 USMG5Q96IX5 58 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 ABHD1Q96SE0 405 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 PLEKHA2Q9HB19 425 aa10.91□□□□□ -0.66
USP28-209ENST00000540925 OVOL1O14753 267 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 RPL5P46777 297 aaKnown RBP10.9□□□□□ -0.66
USP28-209ENST00000540925 UCP3P55916 312 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 DEFA5Q01523 94 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 AADACL3Q5VUY0 350 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 ACSM6Q6P461 480 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 CLVS1Q8IUQ0 354 aaPredicted RBP10.9□□□□□ -0.66
USP28-209ENST00000540925 CADM3Q8N126 398 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 OR51H1Q8NH63 302 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 CD300LFQ8TDQ1 290 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 PHB2Q99623 299 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 ZNF355PQ9NSJ1 428 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 COA4Q9NYJ1 87 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 COMMD9Q9P000 198 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 CCDC59Q9P031 241 aaKnown RBP10.9□□□□□ -0.66
USP28-209ENST00000540925 EXTL2Q9UBQ6 330 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 KLK11Q9UBX7 282 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 ZMAT5Q9UDW3 170 aaKnown RBP10.9□□□□□ -0.66
USP28-209ENST00000540925 MTFP1Q9UDX5 166 aa10.9□□□□□ -0.66
USP28-209ENST00000540925 C13orf42A0A1B0GVH6 325 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 HMX3A6NHT5 357 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 NPIPB5A8MRT5 1133 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 FAM25AB3EWG3 89 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 FAM25CB3EWG5 89 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 FAM25GB3EWG6 89 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 GPR31O00270 319 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 CTDSP2O14595 271 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 ACTL6BO94805 426 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 S1PR2O95136 353 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 RLN1P04808 185 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 CRYGCP07315 174 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 NQO2P16083 231 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 HLA-GP17693 338 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 F2RP25116 425 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 RPL27AP46776 148 aaKnown RBP10.89□□□□□ -0.67
USP28-209ENST00000540925 RPL8P62917 257 aaKnown RBP10.89□□□□□ -0.67
USP28-209ENST00000540925 ZNF585BQ52M93 769 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 SSX9Q7RTT3 188 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 LHFPL1Q86WI0 220 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 LAX1Q8IWV1 398 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 OR52I2Q8NH67 350 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 AIFM2Q9BRQ8 373 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 RSRP1Q9BUV0 290 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 RANGRFQ9HD47 186 aaPredicted RBP10.89□□□□□ -0.67
USP28-209ENST00000540925 AKIP1Q9NQ31 210 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 SLC2A9Q9NRM0 540 aa10.89□□□□□ -0.67
USP28-209ENST00000540925 LSM4Q9Y4Z0 139 aaKnown RBP10.89□□□□□ -0.67
USP28-209ENST00000540925 TRAV3A0A0B4J244 114 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 FAM223BA6NKX1 122 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 UPK2O00526 184 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 TRBV12-3P01733 135 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 PRH1P02810 166 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 MYOD1P15172 320 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 OR2B8PP59922 312 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 RHOGP84095 191 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 KLF5Q13887 457 aaPredicted RBP10.88□□□□□ -0.67
USP28-209ENST00000540925 ZNF429Q86V71 674 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 FAM223AQ8IWN6 122 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 DGCR14Q96DF8 476 aaKnown RBP10.88□□□□□ -0.67
USP28-209ENST00000540925 FANCD2OSQ96PS1 177 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 FAM212BQ9NTI7 297 aaPredicted RBP10.88□□□□□ -0.67
USP28-209ENST00000540925 TMEM140Q9NV12 185 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 ZNF257Q9Y2Q1 563 aa10.88□□□□□ -0.67
USP28-209ENST00000540925 H3BMQ9 156 aa10.87□□□□□ -0.67
USP28-209ENST00000540925 M0QYG6 137 aa10.87□□□□□ -0.67
USP28-209ENST00000540925 MPPED1O15442 326 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms