RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 COLCA2A8K830 154 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 CEBPZOSA8MTT3 80 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 E7EQL1 145 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 ATXN7O15265 892 aaPredicted RBP11.32□□□□□ -0.6
RTN3-210ENST00000540798 GNG10P50151 68 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 POU2AF1Q16633 256 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 PRAMEF5Q5TYX0 476 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 ZCCHC24Q8N2G6 241 aaKnown RBP11.32□□□□□ -0.6
RTN3-210ENST00000540798 RNASE6Q93091 150 aaKnown RBP11.32□□□□□ -0.6
RTN3-210ENST00000540798 ADTRPQ96IZ2 230 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 EGLN1Q9GZT9 426 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 SAP30LQ9HAJ7 183 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 PTPRQQ9UMZ3 2332 aa11.32□□□□□ -0.6
RTN3-210ENST00000540798 OR2B8PP59922 312 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 RHEBQ15382 184 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 USF2Q15853 346 aaPredicted RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 FBXL19-AS1Q494R0 122 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 PYY3Q5JQD4 70 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 TMEM140Q9NV12 185 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 CBY1Q9Y3M2 126 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 RP1L1Q8IWN7 2480 aaPredicted RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 C7orf77A4D0Y5 90 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 MBP02144 154 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 IL6RP08887 468 aaPredicted RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 OR13C7P0DN81 318 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 EFNB3Q15768 340 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 HAGHQ16775 308 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 RNF212Q495C1 297 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 C1orf87Q8N0U7 546 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 TRGV8A0A0C4DH27 118 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 VSTM5A8MXK1 200 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 TMPRSS2O15393 492 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 IGKV1D-33P01593 117 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 IGKV1-33P01594 117 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 ERVK-16P61578 105 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 MRPS11P82912 194 aaKnown RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 C15orf54Q8N8G6 183 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 OR4A16Q8NH70 328 aa11.31□□□□□ -0.6
RTN3-210ENST00000540798 ZCCHC14Q8WYQ9 949 aaKnown RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 CISD1Q9NZ45 108 aaKnown RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 SLC25A10Q9UBX3 287 aaPredicted RBP11.31□□□□□ -0.6
RTN3-210ENST00000540798 PPIAL4EA0A075B759 164 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 PRSS46E5RG02 174 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 PPIAL4DF5H284 164 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 PPIAL4FP0DN26 164 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 CA7P43166 264 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 SPINK9Q5DT21 86 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 SOHLH1Q5JUK2 328 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 ACSM6Q6P461 480 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 VKORC1L1Q8N0U8 176 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 Q8N7P7 452 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 TMEM106BQ9NUM4 274 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 PPIAL4AQ9Y536 164 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 TRAV3A0A0B4J244 114 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 C15orf61A6NNL5 157 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 RBMXL2O75526 392 aaKnown RBP11.3□□□□□ -0.6
RTN3-210ENST00000540798 SNRPCP09234 159 aaKnown RBP11.3□□□□□ -0.6
RTN3-210ENST00000540798 ZNF787Q6DD87 383 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 FOXA2Q9Y261 457 aaPredicted RBP11.3□□□□□ -0.6
RTN3-210ENST00000540798 RAXQ9Y2V3 346 aa11.3□□□□□ -0.6
RTN3-210ENST00000540798 DOCK11Q5JSL3 2073 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 FOLR2P14207 255 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 MAJINQ3KP22 176 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 LYG1Q8N1E2 194 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 RPP25LQ8N5L8 163 aaKnown RBP11.29□□□□□ -0.6
RTN3-210ENST00000540798 NPCDR1Q9BY65 106 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 GAL3ST2Q9H3Q3 398 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 TMEM14BQ9NUH8 114 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 ICE1Q9Y2F5 2266 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 YIF1AO95070 293 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 TFF3Q07654 80 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 ZNF833PQ6ZTB9 187 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 NEUROG1Q92886 237 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 CLCC1Q96S66 551 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 RPS10P5Q9NQ39 176 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 KAAG1Q9UBP8 84 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 IFNA17P01571 189 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 BCL2P10415 239 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 FGF7P21781 194 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 HEPN1Q6WQI6 88 aa11.29□□□□□ -0.6
RTN3-210ENST00000540798 TPRP12270 2363 aaKnown RBP11.28□□□□□ -0.6
RTN3-210ENST00000540798 CACNA1AO00555 2505 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 SNRNP70P08621 437 aaKnown RBP11.28□□□□□ -0.6
RTN3-210ENST00000540798 CT45A6P0DMU7 189 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 CT45A5P0DMU8 189 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 CT45A7P0DMV0 189 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 DAOP14920 347 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 OR4A47Q6IF82 309 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 ST6GALNAC3Q8NDV1 305 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 ZNF596Q8TC21 504 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 TMEM170AQ8WVE7 144 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 WDR83OSQ9Y284 106 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 APOBEC3AP31941 199 aaPredicted RBP11.28□□□□□ -0.6
RTN3-210ENST00000540798 ELLP55199 621 aaPredicted RBP11.28□□□□□ -0.6
RTN3-210ENST00000540798 TMEM200BQ69YZ2 307 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 LCN15Q6UWW0 184 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 CYB561D1Q8N8Q1 229 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 C8orf31Q8N9H6 132 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 ISOC2Q96AB3 205 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 MS4A5Q9H3V2 200 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms