RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-208	ENST00000540438		A8MXE2	369 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	GZMH	P20718	246 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	LGALS4	P56470	323 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	FAM3B	P58499	235 aa	Predicted RBP	13.92	□□□□□ -0.18
USP28-208	ENST00000540438	MEF2B	Q02080	365 aa	Predicted RBP	13.92	□□□□□ -0.18
USP28-208	ENST00000540438	TCF23	Q7RTU1	214 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	FRZB	Q92765	325 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	SNX22	Q96L94	193 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	PARL	Q9H300	379 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438		A0A1W2PPQ1	181 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	BTBD17	A6NE02	478 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	PPIH	O43447	177 aa	Known RBP	13.92	□□□□□ -0.18
USP28-208	ENST00000540438	OR4A8	P0C604	315 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	NPPC	P23582	126 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	MRPS11	P82912	194 aa	Known RBP	13.92	□□□□□ -0.18
USP28-208	ENST00000540438	ZNF383	Q8NA42	475 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	VAX2	Q9UIW0	290 aa		13.92	□□□□□ -0.18
USP28-208	ENST00000540438	DPRX	A6NFQ7	191 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	SRRM4	A7MD48	611 aa	Known RBP	13.91	□□□□□ -0.18
USP28-208	ENST00000540438	IFNL4	K9M1U5	179 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	RAB29	O14966	203 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	FOXH1	O75593	365 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	ERVK-16	P61578	105 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	LYPD2	Q6UXB3	125 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	C16orf82	Q7Z2V1	217 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	PRR7	Q8TB68	274 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	RNF7	Q9UBF6	113 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	LY6H	O94772	140 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	EDARADD	Q8WWZ3	215 aa		13.91	□□□□□ -0.18
USP28-208	ENST00000540438	CISD1	Q9NZ45	108 aa	Known RBP	13.91	□□□□□ -0.18
USP28-208	ENST00000540438	IFITM10	A6NMD0	228 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	GFRAL	Q6UXV0	394 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	C19orf35	Q6ZS72	473 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	FAM210B	Q96KR6	192 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	RYDEN	Q9NUL5	291 aa	Known RBP	13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BK	O60814	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BJ	P06899	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BO	P23527	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BB	P33778	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BD	P58876	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BC	P62807	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	SERF2	P84101	59 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST2H2BE	Q16778	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	13.9	□□□□□ -0.18
USP28-208	ENST00000540438	C10orf55	Q5SWW7	151 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	OR4A47	Q6IF82	309 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	ABHD5	Q8WTS1	349 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BH	Q93079	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BN	Q99877	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	HIST1H2BM	Q99879	126 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	UNKL	Q9H9P5	680 aa	Known RBP	13.9	□□□□□ -0.18
USP28-208	ENST00000540438	LAMP3	Q9UQV4	416 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	TCF19	Q9Y242	345 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	IGHV3-21	A0A0B4J1V1	117 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438		A0A1W2PPV4	95 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	LINC00587	B1AMM8	73 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	AP4M1	O00189	453 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	NDUFB4	O95168	129 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	ADH4	P08319	380 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	CDC34	P49427	236 aa	Predicted RBP	13.9	□□□□□ -0.18
USP28-208	ENST00000540438	PSMB3	P49720	205 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	SELENOV	P59797	346 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	PDLIM3	Q53GG5	364 aa	Predicted RBP	13.9	□□□□□ -0.18
USP28-208	ENST00000540438	PRR31	Q5SQ13	230 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	MRGPRG	Q86SM5	289 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	ZNF114	Q8NC26	417 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	MBD3L1	Q8WWY6	194 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	YPEL4	Q96NS1	127 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	SDF2L1	Q9HCN8	221 aa		13.9	□□□□□ -0.18
USP28-208	ENST00000540438	KLF2	Q9Y5W3	355 aa	Predicted RBP	13.9	□□□□□ -0.18
USP28-208	ENST00000540438	C11orf94	C9JXX5	98 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	FCN3	O75636	299 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	CEACAM4	O75871	244 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	S100A9	P06702	114 aa	Known RBP	13.89	□□□□□ -0.19
USP28-208	ENST00000540438	TRGC1	P0CF51	173 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	THBS3	P49746	956 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	RELB	Q01201	579 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	TREML4	Q6UXN2	200 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	ASCL5	Q7RTU5	278 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	FAM216A	Q8WUB2	273 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	GAFA1	Q96PS6	74 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	PSMG3	Q9BT73	122 aa	Predicted RBP	13.89	□□□□□ -0.19
USP28-208	ENST00000540438	LRFN3	Q9BTN0	628 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	SEPSECS	Q9HD40	501 aa	Known RBP	13.89	□□□□□ -0.19
USP28-208	ENST00000540438	TRGV10	A0A0A0MS01	117 aa		13.89	□□□□□ -0.19
USP28-208	ENST00000540438	HOXB1	P14653	301 aa	Predicted RBP	13.89	□□□□□ -0.19
USP28-208	ENST00000540438	DSCAML1	Q8TD84	2053 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	HPRT1	P00492	218 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	SOD3	P08294	240 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	ARL14EPL	P0DKL9	152 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	FOLR2	P14207	255 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	GRN	P28799	593 aa	Known RBP	13.88	□□□□□ -0.19
USP28-208	ENST00000540438	CRYBG3	Q68DQ2	2970 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	PINX1	Q96BK5	328 aa	Known RBP	13.88	□□□□□ -0.19
USP28-208	ENST00000540438	PCGF1	Q9BSM1	259 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	CA2	P00918	260 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	REG1A	P05451	166 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	ZNF66	Q6ZN08	573 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	ZBTB34	Q8NCN2	500 aa		13.88	□□□□□ -0.19
USP28-208	ENST00000540438	OR10D4P	Q8NGN7	298 aa		13.88	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms