RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 FAM74A4Q5TZK3 123 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 OR4C13Q8NGP0 309 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 TCF19Q9Y242 345 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 DTX4Q9Y2E6 619 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 A1L4Q6 167 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM250H0YL14 139 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 LIPFP07098 398 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 HKR1P10072 659 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 VOPP1Q96AW1 172 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM186Q96B77 213 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 SFRP2Q96HF1 295 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 NRTNQ99748 197 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 WBP1LQ9NX94 342 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 TRBV20OR9-2A0A075B6H5 130 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 A0A1W2PP11 408 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 SPINT1O43278 529 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 ISG15P05161 165 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 ARL14EPLP0DKL9 152 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 RND3P61587 244 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 RIPPLY2Q5TAB7 128 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 SAXO1Q8IYX7 474 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 DDA1Q9BW61 102 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 NUP210Q8TEM1 1887 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-209ENST00000537178 IGKV3OR2-268A0A0C4DH90 116 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 SMIM13P0DJ93 91 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 CACNG7P62955 275 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 HIST1H1AQ02539 215 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-209ENST00000537178 PSMG4Q5JS54 123 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 ZNF600Q6ZNG1 722 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 TTC9CQ8N5M4 171 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 FAM169BQ8N8A8 192 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 APCDD1LQ8NCL9 501 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM52Q8NDY8 209 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 NEUROG1Q92886 237 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 WNT2BQ93097 391 aa9.13□□□□□ -0.95
CLIP1-209ENST00000537178 ZNF501Q96CX3 271 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-209ENST00000537178 OPN3Q9H1Y3 402 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-209ENST00000537178 PPIAL4CA0A0B4J2A2 164 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 PPIAL4GP0DN37 164 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 PTGDSP41222 190 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 ZNF826PQ6ZT77 177 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 DUX5Q96PT3 197 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 PEF1Q9UBV8 284 aaKnown RBP9.12□□□□□ -0.95
CLIP1-209ENST00000537178 DOCK3Q8IZD9 2030 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 TSPAN2O60636 221 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 KIAA1644Q3SXP7 199 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 C1orf53Q5VUE5 145 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 SLC25A47Q6Q0C1 308 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 CHODLQ9H9P2 273 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 C1QTNF9BB2RNN3 333 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 NPIPB11E5RHQ5 1161 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 C2orf68Q2NKX9 166 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 SELENOHQ8IZQ5 122 aaKnown RBP9.12□□□□□ -0.95
CLIP1-209ENST00000537178 NABP2Q9BQ15 211 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 ALKBH7Q9BT30 221 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-209ENST00000537178 ZNF729A6NN14 1252 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-209ENST00000537178 NPFFO15130 113 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 THY1P04216 161 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 NUTF2P61970 127 aaKnown RBP9.12□□□□□ -0.95
CLIP1-209ENST00000537178 EEF1AKMT3Q96AZ1 226 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 ZNF414Q96IQ9 312 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 SMIM8Q96KF7 97 aa9.12□□□□□ -0.95
CLIP1-209ENST00000537178 INTS1Q8N201 2190 aaKnown RBP9.11□□□□□ -0.95
CLIP1-209ENST00000537178 C1QCP02747 245 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 CTSSP25774 331 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 HBBP68871 147 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 GOLT1AQ6ZVE7 132 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 ABHD12Q8N2K0 398 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 KCNK17Q96T54 332 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 SCN10AQ9Y5Y9 1956 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 CCDC88CQ9P219 2028 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 TGIF2-C20orf24A0A0A6YYL0 155 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 CEACAM4O75871 244 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 COX5BP10606 129 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM170BQ5T4T1 132 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 TMEM101Q96IK0 257 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 TLNRD1Q9H1K6 362 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 ZG16O60844 167 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 IGKV1D-16P01601 117 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 LCN2P80188 198 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 GLRX5Q86SX6 157 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 CLDND2Q8NHS1 167 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 MS4A3Q96HJ5 214 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 PIMREGQ9BSJ6 248 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 CLEC7AQ9BXN2 247 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 CENPVL1A0A0U1RR11 272 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 PSMB11A5LHX3 300 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 PATE3B3GLJ2 98 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 NPIPB9F8W1W9 429 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 NPIPB7O75200 414 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 PMS2CLQ68D20 193 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 TCF23Q7RTU1 214 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 KCNS1Q96KK3 526 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 NPDC1Q9NQX5 325 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-209ENST00000537178 RNF115Q9Y4L5 304 aa9.11□□□□□ -0.95
CLIP1-209ENST00000537178 GHRHP01286 108 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 LIMS1P48059 325 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 AQP3Q92482 292 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 NPIPB3Q92617 1050 aa9.1□□□□□ -0.95
CLIP1-209ENST00000537178 HIST1H2BAQ96A08 127 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms