RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TMEM250H0YL14 139 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 F2RL2O00254 374 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 OPN1MWP04001 364 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 SOD3P08294 240 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 OPN1MW2P0DN77 364 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 OPN1MW3P0DN78 364 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 CDC34P49427 236 aaPredicted RBP10.89□□□□□ -0.67
LDLR-203ENST00000535915 ACOT6Q3I5F7 207 aaPredicted RBP10.89□□□□□ -0.67
LDLR-203ENST00000535915 LEAP2Q969E1 77 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 IFI27L2Q9H2X8 130 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 PARLQ9H300 379 aa10.89□□□□□ -0.67
LDLR-203ENST00000535915 FAM90A9PA6NNJ1 464 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 PAGE4O60829 102 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 NUTF2P61970 127 aaKnown RBP10.88□□□□□ -0.67
LDLR-203ENST00000535915 RPP30P78346 268 aaKnown RBP10.88□□□□□ -0.67
LDLR-203ENST00000535915 BSXQ3C1V8 233 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 IGF2-ASQ6U949 168 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 WDR83OSQ9Y284 106 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 PHOX2AO14813 284 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 LHBP01229 141 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 SNRPCP09234 159 aaKnown RBP10.88□□□□□ -0.67
LDLR-203ENST00000535915 HIST3H2BBQ8N257 126 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 ZNF292O60281 2723 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 CEP250Q9BV73 2442 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 RBFOX2O43251 390 aaKnown RBP eCLIP10.88□□□□□ -0.67
LDLR-203ENST00000535915 TRGC1P0CF51 173 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 PCP4P48539 62 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 RPL23P62829 140 aaKnown RBP10.88□□□□□ -0.67
LDLR-203ENST00000535915 AARDQ4LEZ3 155 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 C16orf82Q7Z2V1 217 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 FAM216AQ8WUB2 273 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 FRZBQ92765 325 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 TMEM140Q9NV12 185 aa10.88□□□□□ -0.67
LDLR-203ENST00000535915 DYSFO75923 2080 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 CUL9Q8IWT3 2517 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 AKAP13Q12802 2813 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 TRBV24-1A0A075B6N3 115 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 TRAV3A0A0B4J244 114 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 NUBP1P53384 320 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 C4orf17Q53FE4 359 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 GCSAMLQ5JQS6 135 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 DNLZQ5SXM8 178 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 UTF1Q5T230 341 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 C1orf185Q5T7R7 199 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 Q8N7P7 452 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 NECAP1Q8NC96 275 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 ATG101Q9BSB4 218 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 ELOA3CA0A087WX78 387 aaPredicted RBP10.87□□□□□ -0.67
LDLR-203ENST00000535915 TRAV38-1A0A0B4J264 116 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 RRHO14718 337 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 RELBQ01201 579 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 IGFL3Q6UXB1 125 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 ABHD5Q8WTS1 349 aa10.87□□□□□ -0.67
LDLR-203ENST00000535915 SMG1Q96Q15 3661 aaKnown RBP10.86□□□□□ -0.67
LDLR-203ENST00000535915 IGLV3-9A0A075B6K5 115 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 TGOLN2O43493 480 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 KIR2DS2P43631 304 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 RAB7AP51149 207 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 C17orf58Q2M2W7 97 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 C1orf229Q6ZS94 237 aaPredicted RBP10.86□□□□□ -0.67
LDLR-203ENST00000535915 ABHD12Q8N2K0 398 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 ARL6IP6Q8N6S5 226 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 OR52E5Q8NH55 327 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 NEIL1Q96FI4 390 aaPredicted RBP10.86□□□□□ -0.67
LDLR-203ENST00000535915 PACRGQ96M98 296 aaPredicted RBP10.86□□□□□ -0.67
LDLR-203ENST00000535915 DIRC2Q96SL1 478 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 A0A1W2PPV4 95 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 C11orf94C9JXX5 98 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 VDAC2P45880 294 aaPredicted RBP10.86□□□□□ -0.67
LDLR-203ENST00000535915 SELENOVP59797 346 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 DUX4L9Q6RFH8 374 aaPredicted RBP10.86□□□□□ -0.67
LDLR-203ENST00000535915 DEFB108BQ8NET1 73 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 OR4S2Q8NH73 311 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 RNF7Q9UBF6 113 aa10.86□□□□□ -0.67
LDLR-203ENST00000535915 MAP1BP46821 2468 aaKnown RBP10.85□□□□□ -0.67
LDLR-203ENST00000535915 GFRA3O60609 400 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 MPDU1O75352 247 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 BMP5P22003 454 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 TNFAIP6P98066 277 aaPredicted RBP10.85□□□□□ -0.67
LDLR-203ENST00000535915 CT45A1Q5HYN5 189 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 TREML4Q6UXN2 200 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 Q6ZS92 163 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 CT45A3Q8NHU0 189 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 DDB2Q92466 427 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 PATZ1Q9HBE1 687 aaKnown RBP10.85□□□□□ -0.67
LDLR-203ENST00000535915 GCM1Q9NP62 436 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 RAB9BQ9NP90 201 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 SAA2-SAA4A0A096LPE2 208 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 TRGV10A0A0A0MS01 117 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 KBTBD11-OT1A0A1B0GTJ5 212 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 H7BYZ3 331 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 SAA2P0DJI9 122 aaPredicted RBP10.85□□□□□ -0.67
LDLR-203ENST00000535915 CGB3P0DN86 165 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 CGB7P0DN87 165 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 UBE2G2P60604 165 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 RTP5Q14D33 572 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 C3orf36Q3SXR2 165 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 PDLIM3Q53GG5 364 aaPredicted RBP10.85□□□□□ -0.67
LDLR-203ENST00000535915 OR10A7Q8NGE5 316 aa10.85□□□□□ -0.67
LDLR-203ENST00000535915 OR5B12Q96R08 314 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms