RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SS18Q15532 418 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 CLVS2Q5SYC1 327 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 CCDC122Q5T0U0 273 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 TMEM42Q69YG0 159 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 TMEM86AQ8N2M4 240 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 DEFB119Q8N690 84 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 OR2T27Q8NH04 317 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 CLDND2Q8NHS1 167 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 ZNF675Q8TD23 568 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 HAVCR2Q8TDQ0 301 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 SMCR5Q8TEV8 140 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 DIRAS2Q96HU8 199 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 ZNF471Q9BX82 626 aaPredicted RBP1.1□□□□□ -2.23
CD44-238ENST00000534296 CXorf21Q9HAI6 301 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 HRASLSQ9HDD0 168 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 CRCT1Q9UGL9 99 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 C3orf18Q9UK00 162 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 FAM215AQ9Y5M1 114 aa1.1□□□□□ -2.23
CD44-238ENST00000534296 ZFHX2Q9C0A1 2572 aaPredicted RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 ABCC11Q96J66 1382 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 PTPRSQ13332 1948 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 PCLOQ9Y6V0 5065 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 KIAA2026Q5HYC2 2103 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 PLCH2O75038 1416 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 A0A087WUU8 490 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 TMSB15BA0A087X1C1 80 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 TMED7-TICAM2A0A0A6YYA0 188 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 TRAV38-1A0A0B4J264 116 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 A0A0G2JQZ4 141 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 A0A0J9YW62 118 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 A0A1B0GVG6 124 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 HMSDA8MTL9 139 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 C9JCJ5 164 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 COX7A2LO14548 114 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 ACOX3O15254 700 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 APOMO95445 188 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 C8orf88P0DMB2 117 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 COX5BP10606 129 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 RPL12P30050 165 aaKnown RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 S100A7P31151 101 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 CSN1S1P47710 185 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 KRTAP12-1P59990 96 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 TPI1P60174 286 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 POLR2GP62487 172 aaKnown RBP eCLIP1.09□□□□□ -2.23
CD44-238ENST00000534296 FKBP1AP62942 108 aaKnown RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 MLLT11Q13015 90 aaPredicted RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 NDUFA5Q16718 116 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 LRRC75BQ2VPJ9 315 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 HIST2H3PS2Q5TEC6 136 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 SBSNQ6UWP8 590 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 SPATA12Q7Z6I5 190 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 KTN1-AS1Q86SY8 53 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 SLC22A24Q8N4F4 322 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 PACRGLQ8N7B6 248 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 OR51T1Q8NGJ9 327 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 RAB8BQ92930 207 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 GNPNAT1Q96EK6 184 aaPredicted RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 ERMAPQ96PL5 475 aaPredicted RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 NAA38Q9BRA0 125 aaKnown RBP1.09□□□□□ -2.23
CD44-238ENST00000534296 C16orf95Q9H693 158 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 XAGE1AQ9HD64 81 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 NAT8Q9UHE5 227 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 ANGPT4Q9Y264 503 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 PXMP4Q9Y6I8 212 aa1.09□□□□□ -2.23
CD44-238ENST00000534296 HEATR5AQ86XA9 2040 aa1.09□□□□□ -2.24
CD44-238ENST00000534296 NCOR1O75376 2440 aa1.09□□□□□ -2.24
CD44-238ENST00000534296 COL6A5A8TX70 2615 aa1.09□□□□□ -2.24
CD44-238ENST00000534296 STRCP1A6NGW2 1772 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 SIPA1L1O43166 1804 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 ITGB4P16144 1822 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 CCDC168Q8NDH2 2452 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 MDFIC2A0A1B0GVS7 189 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 NOS1APO75052 506 aaPredicted RBP1.08□□□□□ -2.24
CD44-238ENST00000534296 DCTN3O75935 186 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 ISG15P05161 165 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 ZNF705DP0CH99 300 aaPredicted RBP1.08□□□□□ -2.24
CD44-238ENST00000534296 IL9P15248 144 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 IDH3GP51553 393 aaPredicted RBP1.08□□□□□ -2.24
CD44-238ENST00000534296 OR4D2P58180 307 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 HES1Q14469 280 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 C1orf195Q5TG92 126 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 GLT8D1Q68CQ7 371 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 OR10K2Q6IF99 312 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 COA5Q86WW8 74 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 GID4Q8IVV7 300 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 LINC00471Q8N535 108 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 ZNF676Q8N7Q3 588 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 MCFD2Q8NI22 146 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 ROPN1LQ96C74 230 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 IMMP2LQ96T52 175 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 TIMM21Q9BVV7 248 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 VCX3BQ9H321 246 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 RSL24D1Q9UHA3 163 aaKnown RBP1.08□□□□□ -2.24
CD44-238ENST00000534296 PRELID1Q9Y255 219 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 COL4A2P08572 1712 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 PTPRBP23467 1997 aa1.08□□□□□ -2.24
CD44-238ENST00000534296 MDC1Q14676 2089 aaKnown RBP1.08□□□□□ -2.24
CD44-238ENST00000534296 GCN1Q92616 2671 aaKnown RBP1.07□□□□□ -2.24
CD44-238ENST00000534296 WDFY4Q6ZS81 3184 aa1.07□□□□□ -2.24
CD44-238ENST00000534296 KIAA1109Q2LD37 5005 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms