RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PRSS8Q16651 343 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 RPL39P5Q59GN2 51 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 OR2Z1Q8NG97 314 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 PATZ1Q9HBE1 687 aaKnown RBP15.95■□□□□ 0.14
VPS28-213ENST00000530983 JPT1Q9UK76 154 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 BDP1A6H8Y1 2624 aa15.95■□□□□ 0.14
VPS28-213ENST00000530983 M0R1X1 148 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 TMPRSS2O15393 492 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 NKX2-8O15522 239 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 VDAC2P45880 294 aaPredicted RBP15.94■□□□□ 0.14
VPS28-213ENST00000530983 CCL11P51671 97 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 ZNF134P52741 427 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 SRSF6Q13247 344 aaKnown RBP15.94■□□□□ 0.14
VPS28-213ENST00000530983 CST9LP1Q5W188 147 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 OR4A16Q8NH70 328 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 AURKAIP1Q9NWT8 199 aaPredicted RBP15.94■□□□□ 0.14
VPS28-213ENST00000530983 A0A1W2PPV4 95 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 SRRM5B3KS81 715 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 MPDU1O75352 247 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 NDUFB4O95168 129 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 IGHV3-13P01766 116 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 IGHV3-7P01780 117 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 LOXL3P58215 753 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 KCNIP2Q9NS61 270 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 DUSP13Q9UII6 198 aa15.94■□□□□ 0.14
VPS28-213ENST00000530983 TRAV3A0A0B4J244 114 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 AQP7O14520 342 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 OPRK1P41145 380 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 MSMPQ1L6U9 139 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 CYB5R2Q6BCY4 276 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 TEX38Q6PEX7 206 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 CISD2Q8N5K1 135 aaKnown RBP15.93■□□□□ 0.14
VPS28-213ENST00000530983 OR52E5Q8NH55 327 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 MGST2Q99735 147 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 HEYLQ9NQ87 328 aaPredicted RBP15.93■□□□□ 0.14
VPS28-213ENST00000530983 PLSCR4Q9NRQ2 329 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 GFRA3O60609 400 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 YPEL1O60688 119 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 RPP30P78346 268 aaKnown RBP15.93■□□□□ 0.14
VPS28-213ENST00000530983 RELBQ01201 579 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 PDLIM3Q53GG5 364 aaPredicted RBP15.93■□□□□ 0.14
VPS28-213ENST00000530983 KCNIP4Q6PIL6 250 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 TMEM18Q96B42 140 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 YPEL2Q96QA6 119 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 IFI27L2Q9H2X8 130 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 MS4A5Q9H3V2 200 aa15.93■□□□□ 0.14
VPS28-213ENST00000530983 PRR33A8MZF0 331 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 RBFOX2O43251 390 aaKnown RBP eCLIP15.92■□□□□ 0.144e-8■■■■□ 26.4
VPS28-213ENST00000530983 SOX15O60248 233 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 CD99P14209 185 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 TMPRSS3P57727 454 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 CR1LQ2VPA4 569 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 FAM78BQ5VT40 261 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 MRPL41Q8IXM3 137 aaKnown RBP15.92■□□□□ 0.14
VPS28-213ENST00000530983 ZNF114Q8NC26 417 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 GGTLC1Q9BX51 225 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 OPN3Q9H1Y3 402 aaPredicted RBP15.92■□□□□ 0.14
VPS28-213ENST00000530983 CBLN4Q9NTU7 201 aa15.92■□□□□ 0.14
VPS28-213ENST00000530983 PGPEP1LA6NFU8 196 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 MGST3O14880 152 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 ARL14EPLP0DKL9 152 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 IL3RAP26951 378 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 LCN2P80188 198 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 C1orf229Q6ZS94 237 aaPredicted RBP15.91■□□□□ 0.14
VPS28-213ENST00000530983 ABHD12Q8N2K0 398 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 GCSAMQ8N6F7 178 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 ZNF71Q9NQZ8 489 aaPredicted RBP15.91■□□□□ 0.14
VPS28-213ENST00000530983 IGHV3OR15-7A0A075B7D8 119 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 TNFSF13O75888 250 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 C1QTNF9P0C862 333 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 IQCJQ1A5X6 159 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 UTF1Q5T230 341 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 MIC13Q5XKP0 118 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 TMEM144Q7Z5S9 345 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 LRP11Q86VZ4 500 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 ZNRF1Q8ND25 227 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 WFIKKN1Q96NZ8 548 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 TMEM140Q9NV12 185 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 DCAF16Q9NXF7 216 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 PXMP4Q9Y6I8 212 aa15.91■□□□□ 0.14
VPS28-213ENST00000530983 TRBV20OR9-2A0A075B6H5 130 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 F6UZH7 168 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 F2RL2O00254 374 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 STAG3L2P0CL84 134 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 STAG3L3P0CL85 134 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 ERVK-16P61578 105 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 MZT1Q08AG7 82 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 SPRNQ5BIV9 151 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 FAM216AQ8WUB2 273 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 C1orf159Q96HA4 380 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 RBM14Q96PK6 669 aaKnown RBP15.9■□□□□ 0.14
VPS28-213ENST00000530983 TRIP6Q15654 476 aaKnown RBP15.9■□□□□ 0.14
VPS28-213ENST00000530983 DDB2Q92466 427 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 SARAFQ96BY9 339 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 SDSLQ96GA7 329 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 S1PR3Q99500 378 aa15.9■□□□□ 0.14
VPS28-213ENST00000530983 CCKARP32238 428 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 ERVFC1-1P60608 527 aa15.89■□□□□ 0.13
VPS28-213ENST00000530983 RPL15P61313 204 aaKnown RBP15.89■□□□□ 0.13
VPS28-213ENST00000530983 STARD4Q96DR4 205 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms