RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 OR51A2Q8NGJ7 313 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR51T1Q8NGJ9 327 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR2G3Q8NGZ4 309 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 OR4X1Q8NH49 305 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 LYPD6BQ8NI32 183 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SFXN5Q8TD22 340 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ACER1Q8TDN7 264 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PP6455Q8WZ26 134 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PSMF1Q92530 271 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PTX4Q96A99 478 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 APH1AQ96BI3 265 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SDSLQ96GA7 329 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 HPDLQ96IR7 371 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CCDC115Q96NT0 180 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 GPR22Q99680 433 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ANAPC13Q9BS18 74 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 DERL1Q9BUN8 251 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ZNF471Q9BX82 626 aaPredicted RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 EBPLQ9BY08 206 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PLA2G2FQ9BZM2 168 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 DPY30Q9C005 99 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 C20orf27Q9GZN8 174 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 LPAR5Q9H1C0 372 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 DEFB129Q9H1M3 183 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TMEM133Q9H2Q1 129 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 IFI27L2Q9H2X8 130 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 PPDPFQ9H3Y8 114 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 MAP1LC3AQ9H492 121 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 RHOJQ9H4E5 214 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 POPDC3Q9HBV1 291 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ENY2Q9NPA8 101 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 KCNJ16Q9NPI9 418 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TMEM242Q9NWH2 141 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CACFD1Q9UGQ2 172 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 SHPKQ9UHJ6 478 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CYSLTR1Q9Y271 337 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 BTRCQ9Y297 605 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 RPL36Q9Y3U8 105 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 LSM5Q9Y4Y9 91 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 RFNGQ9Y644 331 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 ENPP4Q9Y6X5 453 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 MROH2AA6NES4 1674 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 MYOM1P52179 1685 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CLTCQ00610 1675 aaKnown RBP1.29□□□□□ -2.2
NUP54-208ENST00000508604 SHPRHQ149N8 1683 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 TRPM2O94759 1503 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 CPS1P31327 1500 aa1.29□□□□□ -2.2
NUP54-208ENST00000508604 RGPD8O14715 1765 aaPredicted RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 LAMB1P07942 1786 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 RGPD5Q99666 1765 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 PLIN4Q96Q06 1357 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 ZCCHC11Q5TAX3 1644 aaKnown RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 ZNF106Q9H2Y7 1883 aaKnown RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 A2ML1A8K2U0 1454 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 UNC79Q9P2D8 2635 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 PARP4Q9UKK3 1724 aaKnown RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 GLI2P10070 1586 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 ATG2AQ2TAZ0 1938 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 ADAMTS13Q76LX8 1427 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 PRG4Q92954 1404 aaPredicted RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 A0A0B4J2E0 115 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 A0A0J9YXY3 114 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 TINCRA0A1B0GVN0 87 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 A0A1B0GX12 115 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 KANTRA0A1W2PQU2 76 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 DHRS12A0PJE2 317 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 MEIS3P1A6NDR6 274 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 NAP1L6A6NFF2 107 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 GGT3PA6NGU5 568 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 ZNF670-ZNF695F2Z2N8 137 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 F5H6K3 240 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 J3KT08 172 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 SIRPB1O00241 398 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 CDC42EP2O14613 210 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 TRAF3IP2O43734 574 aaPredicted RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 SYNGR1O43759 233 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 ALOX12BO75342 701 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 DHRS3O75911 302 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 SOX14O95416 240 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 MOSP00540 346 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 IL5P05113 134 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 HLA-DQB2P05538 268 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 MMP7P09237 267 aaPredicted RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 SLC35G6P0C7Q6 338 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 IGLC1P0CG04 106 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 LIMS3P0CW19 117 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 LIMS4P0CW20 117 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 PGA3P0DJD8 388 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 CT45A6P0DMU7 189 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 CT45A5P0DMU8 189 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 CT45A7P0DMV0 189 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 CTSEP14091 401 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 ORM2P19652 201 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 CXCL3P19876 107 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 TCN2P20062 427 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 SRIP30626 198 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 RPL22P35268 128 aaKnown RBP1.28□□□□□ -2.2
NUP54-208ENST00000508604 CTRLP40313 264 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 TNFSF9P41273 254 aa1.28□□□□□ -2.2
NUP54-208ENST00000508604 GUCA1AP43080 201 aaPredicted RBP1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms