RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 MYOD1P15172 320 aa15.85■□□□□ 0.13
SQSTM1-210ENST00000506042 CRHBPP24387 322 aa15.85■□□□□ 0.13
SQSTM1-210ENST00000506042 ZNF66Q6ZN08 573 aa15.85■□□□□ 0.13
SQSTM1-210ENST00000506042 ZNF367Q7RTV3 350 aa15.85■□□□□ 0.13
SQSTM1-210ENST00000506042 TMEM217Q8N7C4 229 aa15.85■□□□□ 0.13
SQSTM1-210ENST00000506042 ST6GALNAC5Q9BVH7 336 aa15.85■□□□□ 0.13
SQSTM1-210ENST00000506042 CXorf65A6NEN9 183 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 A8MWP6 167 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 HLA-DQB1P01920 261 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 GNG2P59768 71 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 ARPC4P59998 168 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 CNIH2Q6PI25 160 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 CLEC19AQ6UXS0 136 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 OR4A5Q8NH83 315 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 TMEM167AQ8TBQ9 72 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 WDR89Q96FK6 387 aaPredicted RBP15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 UFC1Q9Y3C8 167 aa15.84■□□□□ 0.13
SQSTM1-210ENST00000506042 GALP22466 123 aa15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 RPL8P62917 257 aaKnown RBP15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 MRGPRG-AS1Q2M3A8 158 aa15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 OR2B11Q5JQS5 317 aa15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 OR1L6Q8NGR2 347 aa15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 C5orf30Q96GV9 206 aa15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 KLK5Q9Y337 293 aaPredicted RBP15.83■□□□□ 0.12
SQSTM1-210ENST00000506042 DNAH7Q8WXX0 4024 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 J3QRK9 145 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 RBMXL2O75526 392 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 PSMB6P28072 239 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 ELLP55199 621 aaPredicted RBP15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 CATR1Q13166 79 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 TBCEQ15813 527 aaPredicted RBP15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 CDNFQ49AH0 187 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 C10orf55Q5SWW7 151 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 HACD4Q5VWC8 232 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 TMEM61Q8N0U2 210 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 UXS1Q8NBZ7 420 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 BORCS5Q969J3 196 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 MRPL27Q9P0M9 148 aaKnown RBP15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 SPATA2Q9UM82 520 aa15.82■□□□□ 0.12
SQSTM1-210ENST00000506042 HMX3A6NHT5 357 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 UBE2CO00762 179 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 ZNF735P0CB33 412 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 NFYAP23511 347 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 HSPA13P48723 471 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 LAMTOR1Q6IAA8 161 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 HRASLSQ9HDD0 168 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 TP53TG1Q9Y2A0 90 aa15.81■□□□□ 0.12
SQSTM1-210ENST00000506042 LY6G6CO95867 125 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 HLA-AP01891 365 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 CRYGCP07315 174 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 BMI1P35226 326 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 MSMO1Q15800 293 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 THOC7Q6I9Y2 204 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 ZBTB34Q8NCN2 500 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 SRSF8Q9BRL6 282 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 COMMD5Q9GZQ3 224 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 C6orf62Q9GZU0 229 aaPredicted RBP15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 WFDC10AQ9H1F0 79 aa15.8■□□□□ 0.12
SQSTM1-210ENST00000506042 TRDV1A0A1B0GX56 115 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 TEX22C9J3V5 150 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 SCAF4O95104 1147 aaKnown RBP15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 HLA-GP17693 338 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 OR10A3P58181 314 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 PLET1Q6UQ28 207 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 Q6ZWC4 215 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 HSD17B13Q7Z5P4 300 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 VKORC1L1Q8N0U8 176 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 PUSL1Q8N0Z8 303 aaKnown RBP15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 MFSD4AQ8N468 514 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 OR2C3Q8N628 320 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 LINC00476Q8WZB0 136 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 SPAG8Q99932 426 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 NDUFB11Q9NX14 153 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 TAS2R8Q9NYW2 309 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 ANXA10Q9UJ72 324 aa15.79■□□□□ 0.12
SQSTM1-210ENST00000506042 DYNC2H1Q8NCM8 4307 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-210ENST00000506042 BTNL8Q6UX41 500 aa15.78■□□□□ 0.12
SQSTM1-210ENST00000506042 STPG3Q8N7X2 389 aa15.78■□□□□ 0.12
SQSTM1-210ENST00000506042 CD300LFQ8TDQ1 290 aa15.78■□□□□ 0.12
SQSTM1-210ENST00000506042 BET1LQ9NYM9 111 aa15.78■□□□□ 0.12
SQSTM1-210ENST00000506042 TMEM213A2RRL7 107 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 IGHV3-23P01764 117 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 CLEC3BP05452 202 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 CTRB1P17538 263 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 AQP4P55087 323 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 PLA2G7Q13093 441 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 TM4SF20Q53R12 229 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 CTRB2Q6GPI1 263 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 SSX9Q7RTT3 188 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 TPRA1Q86W33 373 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 CACNG8Q8WXS5 425 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 CCDC140Q96MF4 163 aa15.77■□□□□ 0.12
SQSTM1-210ENST00000506042 NOTOA8MTQ0 251 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 RBFOX2O43251 390 aaKnown RBP eCLIP15.76■□□□□ 0.112e-7■■□□□ 11.7
SQSTM1-210ENST00000506042 SPRY2O43597 315 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 IL6RP08887 468 aaPredicted RBP15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 FGF2P09038 288 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 RPL30P62888 115 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 PMS2P11Q13670 270 aa15.76■□□□□ 0.11
SQSTM1-210ENST00000506042 ZNF585BQ52M93 769 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms