RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 COMPP49747 757 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 PCSK4Q6UW60 755 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 CYP2G1PQ6ZSU1 146 aa9.05□□□□□ -0.96
LIMCH1-205ENST00000503057 IL18BPO95998 194 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 GCHFRP30047 84 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 RTP5Q14D33 572 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 LRP11Q86VZ4 500 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 C1orf147Q96MC9 270 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 DNAJC4Q9NNZ3 241 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 YTHDF2Q9Y5A9 579 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 C19orf67A6NJJ6 358 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 FAM90A9PA6NNJ1 464 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 CA2P00918 260 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 IL6RP08887 468 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 CEACAM1P13688 526 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 HGFACQ04756 655 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 OSR1Q8TAX0 266 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 OR51M1Q9H341 326 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 PROK2Q9HC23 129 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 M0R2Z0 102 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 GCGP01275 180 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 COL8A1P27658 744 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 IBA57Q5T440 356 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 MBNL2Q5VZF2 373 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 OR4A47Q6IF82 309 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 NMSQ5H8A3 153 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 SFRP2Q96HF1 295 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 NABP2Q9BQ15 211 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 IGHV1-18A0A0C4DH31 117 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 FAM157AC9JC47 383 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 TRGC1P0CF51 173 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 APELAP0DMC3 54 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 MEF2CQ06413 473 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 WDR25Q64LD2 544 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 GLRX5Q86SX6 157 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 WDFY1Q8IWB7 410 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 PRR7Q8TB68 274 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 SRD5A3Q9H8P0 318 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 SDF2L1Q9HCN8 221 aa9.04□□□□□ -0.96
LIMCH1-205ENST00000503057 FAM27E3Q08E93 113 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 RIGQ13278 110 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 ZNF343Q6P1L6 599 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 RP1P56715 2156 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 IGHV1-69-2A0A0G2JMI3 117 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 A0A1W2PRD5 423 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 A0A1W2PRF3 423 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 A0A1W2PRM7 423 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 DCTN5Q9BTE1 182 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 RNF115Q9Y4L5 304 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 B9A039 149 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 RBFOX2O43251 390 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 SLC25A17O43808 307 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 RAMP3O60896 148 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 SFTPCP11686 197 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 NUBP1P53384 320 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 ELOBQ15370 118 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 GOSR1O95249 250 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 MORN2Q502X0 79 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 PEAR1Q5VY43 1037 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 TNFRSF19Q9NS68 423 aa9.03□□□□□ -0.96
LIMCH1-205ENST00000503057 CSRP1P21291 193 aaKnown RBP9.02□□□□□ -0.96
LIMCH1-205ENST00000503057 BMI1P35226 326 aa9.02□□□□□ -0.96
LIMCH1-205ENST00000503057 C19orf35Q6ZS72 473 aa9.02□□□□□ -0.96
LIMCH1-205ENST00000503057 PLSCR4Q9NRQ2 329 aa9.02□□□□□ -0.96
LIMCH1-205ENST00000503057 HSPB7Q9UBY9 170 aa9.02□□□□□ -0.96
LIMCH1-205ENST00000503057 LINC00312Q9Y6C7 94 aa9.02□□□□□ -0.96
LIMCH1-205ENST00000503057 IGHV3-72A0A0B4J1Y9 119 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 RND2P52198 227 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 PRSS3P2Q8NHM4 247 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 UBTD1Q9HAC8 227 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 TRBV9A0A0B4J1U6 114 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 NPIPB11E5RHQ5 1161 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 GATAD1Q8WUU5 269 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 GRAMD2BQ96HH9 432 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 TMEM106BQ9NUM4 274 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 ZNF581Q9P0T4 197 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 IGHV3-21A0A0B4J1V1 117 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 M0R143 59 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 F2RL2O00254 374 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 LCN2P80188 198 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 COLCA1Q6ZS62 124 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 OR4A5Q8NH83 315 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 SCNM1Q9BWG6 230 aa9.02□□□□□ -0.97
LIMCH1-205ENST00000503057 FOLR2P14207 255 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 HCP5Q6MZN7 132 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 SSX7Q7RTT5 188 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 OR8I2Q8N0Y5 310 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 MBD3L1Q8WWY6 194 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 RNF166Q96A37 237 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 RALYQ9UKM9 306 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 ASXL3Q9C0F0 2248 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 PPIAL4CA0A0B4J2A2 164 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 HLA-DQA1P01909 254 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 PPIAL4GP0DN37 164 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 APOBEC3AP31941 199 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 RPL29P47914 159 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 GBGT1Q8N5D6 347 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 FAM216BQ8N7L0 139 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 NHLRC2Q8NBF2 726 aa9.01□□□□□ -0.97
LIMCH1-205ENST00000503057 FAM222BQ8WU58 562 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms