RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR4X1Q8NH49 305 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ABHD17AQ96GS6 310 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 HSD17B10Q99714 261 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 QTRT1Q9BXR0 403 aaKnown RBP13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 OR9G9P0C7N8 305 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 GZMHP20718 246 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 C1orf162Q8NEQ5 155 aaPredicted RBP13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 OR10A7Q8NGE5 316 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 OR4F5Q8NH21 305 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 OR4F4Q96R69 305 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SRD5A3Q9H8P0 318 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 MANBALQ9NQG1 85 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 LAMP3Q9UQV4 416 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SSUH2Q9Y2M2 353 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 HCFC1P51610 2035 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 M0R143 59 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 HTD2P86397 168 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TBR1Q16650 682 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SMIM21Q3B7S5 101 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 OR51G1Q8NGK1 321 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DKK4Q9UBT3 224 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DVL1O14640 695 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PAGE4O60829 102 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 IGLV1-44P01699 117 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 NPPCP23582 126 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TMPRSS3P57727 454 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PAX5Q02548 391 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 JOSD1Q15040 202 aaPredicted RBP13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DIRC2Q96SL1 478 aa13.35□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 RBMXL2O75526 392 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TMEM11P17152 192 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 EGR1P18146 543 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 HOXC12P31275 282 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DUTP33316 252 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 NECAP1Q8NC96 275 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 LRRC29Q8WV35 223 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SNX22Q96L94 193 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SNHG12Q9BXW3 62 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 OR6C3Q9NZP0 311 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 CHTOPQ9Y3Y2 248 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ZGRF1Q86YA3 2104 aa13.34□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 IGHV2OR16-5A0A0B4J2B6 119 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 IGHV1-18A0A0C4DH31 117 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SMCO3A2RU48 225 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 M0QZK8 103 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ITGB1BP1O14713 200 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 GGCTO75223 188 aaKnown RBP13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ADH4P08319 380 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 FABP4P15090 132 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TUBG1P23258 451 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PRDX2P32119 198 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TDGF1P3P51864 188 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 LTC4SQ16873 150 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ZNF718Q3SXZ3 478 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 MBNL2Q5VZF2 373 aaKnown RBP13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 MRPL52Q86TS9 123 aaKnown RBP13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ZNF709Q8N972 641 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 Q8TCH9 128 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ELOVL1Q9BW60 279 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TUBG2Q9NRH3 451 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 WDR83OSQ9Y284 106 aa13.33□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ADGRG4Q8IZF6 3080 aa13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 AQP7O14520 342 aa13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 SPINT2O43291 252 aa13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 EDDM3AQ14507 147 aa13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 FAM90A1Q86YD7 464 aa13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 ZNF664Q8N3J9 261 aa13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TET2Q6N021 2002 aaPredicted RBP13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 HEATR1Q9H583 2144 aaKnown RBP13.33□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 IGKV1D-17A0A075B6S4 117 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 C17orf112F2Z3M2 114 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 H7BYZ3 331 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GYPAP02724 150 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GALR1P47211 349 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 LY6DQ14210 128 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 MSMPQ1L6U9 139 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GCSAMLQ5JQS6 135 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 RNASEH2CQ8TDP1 164 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 NEIL1Q96FI4 390 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PLPPR2Q96GM1 343 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PACRGQ96M98 296 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 HIST1H2BLQ99880 126 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PLSCR4Q9NRQ2 329 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PITPNC1Q9UKF7 332 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CHD6Q8TD26 2715 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 NPSP0C0P6 89 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GCH1P30793 250 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CDC34P49427 236 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 ACOT6Q3I5F7 207 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 MORN2Q502X0 79 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TRAT1Q6PIZ9 186 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 TGIF2LYQ8IUE0 185 aa13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 INTS1Q8N201 2190 aaKnown RBP13.32□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PCNX1Q96RV3 2341 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 FCGR3BO75015 233 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 GPR12P47775 334 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 IGFL2Q6UWQ7 119 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 HPRT1P00492 218 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 CD1BP29016 333 aa13.31□□□□□ -0.28
MSH5-SAPCD1-208ENST00000498473 PCGF1Q9BSM1 259 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms