RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 MAGT1Q9H0U3 335 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 SIRPDQ9H106 197 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 PLEKHA3Q9HB20 300 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 HEYLQ9NQ87 328 aaPredicted RBP6.86□□□□□ -1.31
SF3A1-210ENST00000498259 SIRT7Q9NRC8 400 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 TMEM14BQ9NUH8 114 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 C1RLQ9NZP8 487 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 KIAA1456Q9P272 454 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 DSCAML1Q8TD84 2053 aa6.86□□□□□ -1.31
SF3A1-210ENST00000498259 ZFYVE26Q68DK2 2539 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 IGHV4-30-2A0A087WSY4 118 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 IGHV4-61A0A0C4DH41 118 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 A0A0G2JRQ6 117 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 ODF3BA8MYP8 253 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 LY6LH3BQJ8 138 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 UPK2O00526 184 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 CYB5BO43169 146 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 SOX15O60248 233 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 MOSP00540 346 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 IGKV1-16P04430 117 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 SNCAP37840 140 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 HOXA1P49639 335 aaPredicted RBP6.85□□□□□ -1.31
SF3A1-210ENST00000498259 RPL8P62917 257 aaKnown RBP6.85□□□□□ -1.31
SF3A1-210ENST00000498259 EWSR1Q01844 656 aaKnown RBP eCLIP6.85□□□□□ -1.31
SF3A1-210ENST00000498259 LOXL1Q08397 574 aaPredicted RBP6.85□□□□□ -1.31
SF3A1-210ENST00000498259 SPANXN5Q5MJ07 72 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 OR1L8Q8NGR8 309 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 OR2T10Q8NGZ9 312 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 TMEM167AQ8TBQ9 72 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 SCGB1C1Q8TD33 95 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 ST8SIA2Q92186 375 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 GNPNAT1Q96EK6 184 aaPredicted RBP6.85□□□□□ -1.31
SF3A1-210ENST00000498259 GGACTQ9BVM4 153 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 SLC25A32Q9H2D1 315 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 RBKSQ9H477 322 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 OR51B2Q9Y5P1 312 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 AUP1Q9Y679 476 aa6.85□□□□□ -1.31
SF3A1-210ENST00000498259 YLPM1P49750 1951 aaKnown RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 LRBAP50851 2863 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 MALRD1Q5VYJ5 2156 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 KMT2BQ9UMN6 2715 aaPredicted RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 IFNA10P01566 189 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 SNRNP70P08621 437 aaKnown RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 OR8U8P0C7N1 319 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 SAA1P0DJI8 122 aaPredicted RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 HOXB4P17483 251 aaPredicted RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 HTR2BP41595 481 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 RAB5CP51148 216 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 RELBQ01201 579 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 HABP2Q14520 560 aaPredicted RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 PLGLAQ15195 96 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 THNSL2Q86YJ6 484 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 STPG2Q8N412 459 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 LILRB2Q8N423 598 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 RNF141Q8WVD5 230 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 C1orf159Q96HA4 380 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 ATP5SQ99766 215 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 SRSF8Q9BRL6 282 aaKnown RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 QTRT1Q9BXR0 403 aaKnown RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 C7orf69Q9H7B7 122 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 MMP26Q9NRE1 261 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 FAM96BQ9Y3D0 163 aa6.84□□□□□ -1.31
SF3A1-210ENST00000498259 SMG1Q96Q15 3661 aaKnown RBP6.84□□□□□ -1.31
SF3A1-210ENST00000498259 DOCK11Q5JSL3 2073 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 FAM24AA6NFZ4 105 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 UMAD1C9J7I0 102 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 FAM157AC9JC47 383 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 INS-IGF2F8WCM5 200 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 RNASEK-C17orf49H0YIS7 233 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 TIMM23O14925 209 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 NPFFO15130 113 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 NXPH3O95157 252 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 IL6RP08887 468 aaPredicted RBP6.83□□□□□ -1.32
SF3A1-210ENST00000498259 OR9G9P0C7N8 305 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 IAPPP10997 89 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 COL8A1P27658 744 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 LINC00205P59089 165 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 OR2B8PP59922 312 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 PRCDQ00LT1 54 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 IFITM2Q01629 132 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 RAB31Q13636 194 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 EXOSC2Q13868 293 aaKnown RBP6.83□□□□□ -1.32
SF3A1-210ENST00000498259 HES1Q14469 280 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 SSX2Q16385 188 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 IZUMO4Q1ZYL8 232 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 Q5PR19 223 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 UTF1Q5T230 341 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 C1orf229Q6ZS94 237 aaPredicted RBP6.83□□□□□ -1.32
SF3A1-210ENST00000498259 PPP1R27Q86WC6 154 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 PDZD9Q8IXQ8 264 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 VKORC1L1Q8N0U8 176 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 OR5C1Q8NGR4 320 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 REG4Q9BYZ8 158 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 KCNIP2Q9NS61 270 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 HIF1ANQ9NWT6 349 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 FBXL17Q9UF56 701 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 TCF19Q9Y242 345 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 HILPDAQ9Y5L2 63 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 COL12A1Q99715 3063 aa6.83□□□□□ -1.32
SF3A1-210ENST00000498259 USF3Q68DE3 2245 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms