RNA–Protein interactions for RNA: ENST00000498077.6

XRN1-214, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 5,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-214ENST00000498077 COPS6Q7L5N1 327 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SSX8Q7RTT4 187 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 ZDHHC17Q8IUH5 632 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SIAH3Q8IW03 269 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 OR5T1Q8NG75 326 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 OR5AK3PQ8NH89 298 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 RNF133Q8WVZ7 376 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 FAM162AQ96A26 154 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 OPRPNQ99935 248 aaPredicted RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 LXNQ9BS40 222 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 TM2D1Q9BX74 207 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SELENOIQ9C0D9 397 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 NHP2Q9NX24 153 aaKnown RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 DAPP1Q9UN19 280 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 TGP01266 2768 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SMG1Q96Q15 3661 aaKnown RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 NIPBLQ6KC79 2804 aaeCLIP1.11□□□□□ -2.233e-7■■■■■ 27.8
XRN1-214ENST00000498077 IGHV4-4A0A075B6R2 117 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 IGHV7-4-1A0A0J9YVY3 117 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 C11orf86A6NJI1 115 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 H0YIZ8 118 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 M0R2Z0 102 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SMAD6O43541 496 aaKnown RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 KDELR3O43731 214 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 EFNA2O43921 213 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SRPX2O60687 465 aaPredicted RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 ZNF253O75346 499 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 PGLYRP1O75594 196 aaPredicted RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 CCNE2O96020 404 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SPINK8P0C7L1 97 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SLC25A4P12235 298 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 GTF2F2P13984 249 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 WT1P19544 449 aaPredicted RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 GNG11P61952 73 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 DLK1P80370 383 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 CDKL1Q00532 357 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 IRF8Q02556 426 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 CDH17Q12864 832 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 HSPB3Q12988 150 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 PDZK1IP1Q13113 114 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 NPTX1Q15818 432 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 DEFB113Q30KQ7 82 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 C2orf27AQ580R0 203 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 CLLU1Q5K131 121 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 KCTD11Q693B1 232 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 METTL7BQ6UX53 244 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 WDR82Q6UXN9 313 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 OR6Q1Q8NGQ2 317 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 OR5AK2Q8NH90 309 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SCAMP5Q8TAC9 235 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 TAF15Q92804 592 aaKnown RBP eCLIP1.11□□□□□ -2.23
XRN1-214ENST00000498077 TMEM141Q96I45 108 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 CAPZA3Q96KX2 299 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 P2RX4Q99571 388 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SLC19A3Q9BZV2 496 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SLC7A5P2Q9GIP4 190 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 EIF5A2Q9GZV4 153 aaKnown RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 KCNMB3Q9NPA1 279 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 PHPT1Q9NRX4 125 aaPredicted RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 TVP23BQ9NYZ1 205 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 ZNF580Q9UK33 172 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 SLC17A4Q9Y2C5 497 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 KIF25-AS1Q9Y6Z4 181 aa1.11□□□□□ -2.23
XRN1-214ENST00000498077 PHF3Q92576 2039 aaKnown RBP1.11□□□□□ -2.23
XRN1-214ENST00000498077 H3BMM0 161 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 ZNF561-AS1K7EIQ3 104 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 CDC42EP2O14613 210 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 TXNL1O43396 289 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 IL18BPO95998 194 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 AZU1P20160 251 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 HRH1P35367 487 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 MDH1P40925 334 aaKnown RBP1.1□□□□□ -2.23
XRN1-214ENST00000498077 TNFSF10P50591 281 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 RBM3P98179 157 aaKnown RBP1.1□□□□□ -2.23
XRN1-214ENST00000498077 FKBP3Q00688 224 aaKnown RBP1.1□□□□□ -2.23
XRN1-214ENST00000498077 NDUFA9Q16795 377 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 DEFB121Q5J5C9 76 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 CTSL3PQ5NE16 218 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 OTPQ5XKR4 325 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 ZFAND6Q6FIF0 208 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 PARM1Q6UWI2 310 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 LIN28BQ6ZN17 250 aaKnown RBP eCLIP1.1□□□□□ -2.23
XRN1-214ENST00000498077 SNX29P2Q8IUI4 249 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 STHQ8IWL8 128 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 ZNF444Q8N0Y2 327 aaPredicted RBP1.1□□□□□ -2.23
XRN1-214ENST00000498077 LRRC18Q8N456 261 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 NATD1Q8N6N6 113 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 OR4C13Q8NGP0 309 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 OR1L6Q8NGR2 347 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 OR13C6PQ8NH95 151 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 H1FXQ92522 213 aaKnown RBP1.1□□□□□ -2.23
XRN1-214ENST00000498077 UBE2WQ96B02 151 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 C8orf44Q96CB5 159 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 ZNF625Q96I27 306 aaPredicted RBP1.1□□□□□ -2.23
XRN1-214ENST00000498077 C2orf50Q96LR7 162 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 TXNDC17Q9BRA2 123 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 TPPP3Q9BW30 176 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 OPN4Q9UHM6 478 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 GUCA1BQ9UMX6 200 aa1.1□□□□□ -2.23
XRN1-214ENST00000498077 TP53TG5Q9Y2B4 290 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms