RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 K7EQM0 130 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 ADH4P08319 380 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 RPL31P62899 125 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 Q6ZT83 130 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 PRSS3P2Q8NHM4 247 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 PKIBQ9C010 78 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 NOTCH2Q04721 2471 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A10PA6NDY2 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A18PA6NE21 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A16PA6NEW6 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A20PA6NIJ5 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A8PA6NJQ4 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A7PA6NKC0 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A22PA8MWA6 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A12PA8MX19 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A5PA8MXJ8 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A23PA8MXZ1 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 WNT9BO14905 357 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 SLC25A5P05141 298 aaKnown RBP13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A15PP0C7V4 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A13PP0C7W8 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A14PP0C7W9 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM90A24PP0C7X0 464 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 CEACAM1P13688 526 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 CLDN18P56856 261 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 KHDC1LQ5JSQ8 128 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 WDYHV1Q96HA8 205 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 SEMA5BQ9P283 1151 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 PXMP4Q9Y6I8 212 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 DENND4CQ5VZ89 1909 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 OR4A8P0C604 315 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 UCP1P25874 307 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 PRR7Q8TB68 274 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM122AQ96E09 287 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 C18orf12Q96KH6 178 aa13.82□□□□□ -0.2
CCDC88B-209ENST00000494080 VENTXO95231 258 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 FXYD3Q14802 87 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM89BQ8N5H3 189 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 BEND2Q8NDZ0 799 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 PLXNA2O75051 1894 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 CCL21O00585 134 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 BLNKQ8WV28 456 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 YTHDF2Q9Y5A9 579 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 TEX50A0A1B0GTY4 177 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 MGST3O14880 152 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 CELA3BP08861 270 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 GZMBP10144 247 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 MPV17P39210 176 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 ZNF524Q96C55 264 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 TMEM208Q9BTX3 173 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 REPIN1Q9BWE0 567 aaKnown RBP13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 MS4A5Q9H3V2 200 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 PROB1E7EW31 1015 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 ZG16O60844 167 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 PMCHL1Q16048 86 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 MIC13Q5XKP0 118 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 OR5P3Q8WZ94 311 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 RNF2Q99496 336 aa13.81□□□□□ -0.2
CCDC88B-209ENST00000494080 C5orf63A6NC05 138 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 FAM157AC9JC47 383 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 TCF23Q7RTU1 214 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 MMD2Q8IY49 270 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 TMEM106BQ9NUM4 274 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 OTX1P32242 354 aaPredicted RBP13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 LRRC75BQ2VPJ9 315 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 DNAH12Q6ZR08 3092 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 APELAP0DMC3 54 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 KRTCAP3Q53RY4 240 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 ADTRPQ96IZ2 230 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 IL19Q9UHD0 177 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 DPRXA6NFQ7 191 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 MARCH11A6NNE9 402 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 SLC17A3O00476 420 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 CDPF1Q6NVV7 123 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 BMPERQ8N8U9 685 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 ZBTB34Q8NCN2 500 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 C1QTNF5Q9BXJ0 243 aa13.8□□□□□ -0.2
CCDC88B-209ENST00000494080 USF3Q68DE3 2245 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 ARL14EPLP0DKL9 152 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 LYL1P12980 280 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 TEPPQ6URK8 271 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 WBP1Q96G27 269 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 SERF1AO75920 110 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 Q0VFX4 171 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 LEAP2Q969E1 77 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 TBL2Q9Y4P3 447 aaKnown RBP13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 DMRTC2Q8IXT2 367 aaPredicted RBP13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 SAXO1Q8IYX7 474 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 HARBI1Q96MB7 349 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 TXNDC17Q9BRA2 123 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 MAP1LC3CQ9BXW4 147 aa13.79□□□□□ -0.2
CCDC88B-209ENST00000494080 FBLL1A6NHQ2 334 aaKnown RBP13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 A8MWP6 167 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 HLA-DQA1P01909 254 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 CECR9P0C854 216 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PQLC2Q6ZP29 291 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 ZNF525Q8N782 197 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 OR51G1Q8NGK1 321 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 PCNTO95613 3336 aa13.78□□□□□ -0.2
CCDC88B-209ENST00000494080 MUC6Q6W4X9 2439 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms