RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CT45A7P0DMV0 189 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 VSIG10L2P0DP72 767 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 F2RP25116 425 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 PAX6P26367 422 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 RAB13P51153 203 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 LINC00205P59089 165 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 RPL30P62888 115 aaKnown RBP9.7□□□□□ -0.86
UPF3A-210ENST00000493727 C2orf68Q2NKX9 166 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 LDLRAD2Q5SZI1 272 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 SPAG16Q8N0X2 631 aa9.7□□□□□ -0.86
UPF3A-210ENST00000493727 A0A1W2PPI3 338 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 LINC00473A8K010 186 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 H0YJW9 148 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 PLXNB1O43157 2135 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 PROP1O75360 226 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 B3GALNT1O75752 331 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 SFT2D2O95562 160 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 IL5P05113 134 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 RRASP10301 218 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 BRS3P32247 399 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 EIF4EBP1Q13541 118 aaPredicted RBP9.69□□□□□ -0.86
UPF3A-210ENST00000493727 HES1Q14469 280 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 SP6Q3SY56 376 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 LYG2Q86SG7 212 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 DYNAPQ8N1N2 210 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 ZNF383Q8NA42 475 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 OR52B4Q8NGK2 314 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 OR4S2Q8NH73 311 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 CD300LFQ8TDQ1 290 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 SEC22CQ9BRL7 303 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 ALX4Q9H161 411 aaPredicted RBP9.69□□□□□ -0.86
UPF3A-210ENST00000493727 RAB18Q9NP72 206 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 WASHC3Q9Y3C0 194 aa9.69□□□□□ -0.86
UPF3A-210ENST00000493727 C9orf170A2RU37 121 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 CREBL2O60519 120 aaPredicted RBP9.68□□□□□ -0.86
UPF3A-210ENST00000493727 CRYZL1O95825 349 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 MC5RP33032 325 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 MECP2P51608 486 aaKnown RBP9.68□□□□□ -0.86
UPF3A-210ENST00000493727 SRPXP78539 464 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 DHODHQ02127 395 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 DHRS2Q13268 280 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 AANATQ16613 207 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 TATDN3Q17R31 274 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 PDPNQ86YL7 162 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 ZNF695Q8IW36 515 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 TCTEX1D1Q8N7M0 179 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 COQ8AQ8NI60 647 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 RNASE11Q8TAA1 199 aaKnown RBP9.68□□□□□ -0.86
UPF3A-210ENST00000493727 ZNF431Q8TF32 576 aaPredicted RBP9.68□□□□□ -0.86
UPF3A-210ENST00000493727 TP53RKQ96S44 253 aa9.68□□□□□ -0.86
UPF3A-210ENST00000493727 DNAH9Q9NYC9 4486 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 SSNA1O43805 119 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 RAMP3O60896 148 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 S1PR2O95136 353 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 IGKV1D-33P01593 117 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 IGKV1-33P01594 117 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 LPAR6P43657 344 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 SUPT4H1P63272 117 aaKnown RBP9.67□□□□□ -0.86
UPF3A-210ENST00000493727 LRRC75BQ2VPJ9 315 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 FBLN7Q53RD9 439 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 LGI3Q8N145 548 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 UXS1Q8NBZ7 420 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 OR5AN1Q8NGI8 311 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 DDB2Q92466 427 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 FLYWCH2Q96CP2 140 aaKnown RBP9.67□□□□□ -0.86
UPF3A-210ENST00000493727 GALNT14Q96FL9 552 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 AJUBAQ96IF1 538 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 PHB2Q99623 299 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 SSX3Q99909 188 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 TMEM222Q9H0R3 208 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 RANBP3Q9H6Z4 567 aaPredicted RBP9.67□□□□□ -0.86
UPF3A-210ENST00000493727 ALG5Q9Y673 324 aa9.67□□□□□ -0.86
UPF3A-210ENST00000493727 PIGBOS1A0A0B4J2F0 54 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 H3BUX3 64 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 RBFOX2O43251 390 aaKnown RBP eCLIP9.66□□□□□ -0.86
UPF3A-210ENST00000493727 ATG12O94817 140 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 DUS4LO95620 317 aaKnown RBP9.66□□□□□ -0.86
UPF3A-210ENST00000493727 HPRT1P00492 218 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 SNRNP70P08621 437 aaKnown RBP9.66□□□□□ -0.86
UPF3A-210ENST00000493727 FAM106CPP0CH98 169 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 RPA2P15927 270 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 TMEM11P17152 192 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 CD24P25063 80 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 UCP1P25874 307 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 CD1BP29016 333 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 AKR1C2P52895 323 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 ERVK-16P61578 105 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 RPS16P62249 146 aaKnown RBP9.66□□□□□ -0.86
UPF3A-210ENST00000493727 TMEM187Q14656 261 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 TMEM268Q5VZI3 342 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 LIN54Q6MZP7 749 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 OR4C13Q8NGP0 309 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 OR2T10Q8NGZ9 312 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 HARBI1Q96MB7 349 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 MEGF9Q9H1U4 602 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 OR51J1Q9H342 316 aa9.66□□□□□ -0.86
UPF3A-210ENST00000493727 VGLL3A8MV65 326 aa9.65□□□□□ -0.86
UPF3A-210ENST00000493727 SNRPGP15A8MWD9 76 aa9.65□□□□□ -0.86
UPF3A-210ENST00000493727 MOSP00540 346 aa9.65□□□□□ -0.86
UPF3A-210ENST00000493727 IGKV1-16P04430 117 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms