RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 LRTM1Q9HBL6 345 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 SPANXA1Q9NS26 97 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 TMEM100Q9NV29 134 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 DMAC2Q9NW81 257 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 ZNF226Q9NYT6 803 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 TAS2R5Q9NYW4 299 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 XCL2Q9UBD3 114 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 MTFP1Q9UDX5 166 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 SHPKQ9UHJ6 478 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 ORC6Q9Y5N6 252 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 SLC25A15Q9Y619 301 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 APC2O95996 2303 aa1.91□□□□□ -2.1
VPS41-213ENST00000485955 KMT2CQ8NEZ4 4911 aaKnown RBP1.91□□□□□ -2.1
VPS41-213ENST00000485955 BIRC6Q9NR09 4857 aa1.9□□□□□ -2.1
VPS41-213ENST00000485955 USP9YO00507 2555 aaPredicted RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 FN1P02751 2386 aaKnown RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 TRAV8-2A0A0B4J237 113 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 TEX50A0A1B0GTY4 177 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 RBFOX3A6NFN3 312 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR4C46A6NHA9 309 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 BTNL10A8MVZ5 291 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 K7EP13 123 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 K7EQS6 105 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 SLC17A3O00476 420 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 FAAHO00519 579 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 XKRYO14609 159 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 MYL12BO14950 172 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 NDUFS5O43920 106 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 PDE6DO43924 150 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 EIF1BO60739 113 aaKnown RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 CCDC22O60826 627 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 RDH16O75452 317 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 SULT1C4O75897 302 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 PRB1P04280 392 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 REG1AP05451 166 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 IL3P08700 152 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 TLX1NBP0CAT3 122 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 ERGP11308 486 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 SPNP16150 400 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 CXCL2P19875 107 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 CD34P28906 385 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 EIF1P41567 113 aaKnown RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 CDKN2BP42772 138 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 MARCKSL1P49006 195 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 H2BFSP57053 126 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 FZD2Q14332 565 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 KIAA0087Q14695 138 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 FAM162BQ5T6X4 162 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 TMEM78Q5T7P6 136 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 STEAP4Q687X5 459 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 TBPL2Q6SJ96 375 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OPN5Q6U736 354 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 TOMM20LQ6UXN7 152 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 ALKAL1Q6UXT8 129 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 TEX43Q6ZNM6 134 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 NEGR1Q7Z3B1 354 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 ANGPTL5Q86XS5 388 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 KRTAP13-1Q8IUC0 172 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 UBAC2Q8NBM4 344 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 C11orf72Q8NBR9 251 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR10AD1Q8NGE0 317 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR51A2Q8NGJ7 313 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR10D3Q8NH80 312 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 CD200R1Q8TD46 325 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 LRRC29Q8WV35 223 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 DNAJC9Q8WXX5 260 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 RGP1Q92546 391 aaPredicted RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 EXOSC8Q96B26 276 aaKnown RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 BORCS7Q96B45 105 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 DCPSQ96C86 337 aaKnown RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 LRRC58Q96CX6 371 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 AURKBQ96GD4 344 aaPredicted RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 SMARCD1Q96GM5 515 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 ACY3Q96HD9 319 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 FMC1Q96HJ9 113 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 LINC00477Q96M19 166 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR52E6Q96RD3 313 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 MS4A8Q9BY19 250 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR51I2Q9H344 312 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 FAM96AQ9H5X1 160 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 RRAGDQ9NQL2 400 aaPredicted RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 RASL12Q9NYN1 266 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 OR12D3Q9UGF7 316 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 PCYOX1Q9UHG3 505 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 JPT1Q9UK76 154 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 PYCARDQ9ULZ3 195 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 HIVEP1P15822 2718 aa1.9□□□□□ -2.11
VPS41-213ENST00000485955 SIPA1L3O60292 1781 aaPredicted RBP1.9□□□□□ -2.11
VPS41-213ENST00000485955 CSMD2Q7Z408 3487 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 TRAV8-6A0A0B4J262 113 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 IGHV3OR16-9A0A0B4J2B5 98 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 A0A1B0GV50 99 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 A0A1B0GXF2 115 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 GMNCA6NCL1 334 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 EEF1E1-BLOC1S5C9J1V9 151 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 C8orf87E5RJ46 101 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 M0QYV0 167 aa1.89□□□□□ -2.11
VPS41-213ENST00000485955 HMGB3O15347 200 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 EEF1E1O43324 174 aaKnown RBP1.89□□□□□ -2.11
VPS41-213ENST00000485955 MFSD11O43934 449 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms