RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 MKRN2OSH3BPM6 223 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 ITGB1BP1O14713 200 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 CXCL2P19875 107 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 RPS24P62847 133 aaKnown RBP0.45□□□□□ -2.34
VPS50-217ENST00000485140 LRRC26Q2I0M4 334 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.45□□□□□ -2.34
VPS50-217ENST00000485140 FAM19A2Q8N3H0 131 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 SLC22A24Q8N4F4 322 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 ZNF676Q8N7Q3 588 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 ZNF75CPQ92670 426 aaPredicted RBP0.45□□□□□ -2.34
VPS50-217ENST00000485140 PACRGQ96M98 296 aaPredicted RBP0.45□□□□□ -2.34
VPS50-217ENST00000485140 CCL13Q99616 98 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 SLC22A4Q9H015 551 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 TRABDQ9H4I3 376 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 OR5AC2Q9NZP5 309 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 SCAF11Q99590 1463 aaKnown RBP0.45□□□□□ -2.34
VPS50-217ENST00000485140 CPAMD8Q8IZJ3 1885 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 NAV1Q8NEY1 1877 aa0.45□□□□□ -2.34
VPS50-217ENST00000485140 MUC5BQ9HC84 5762 aaPredicted RBP0.45□□□□□ -2.34
VPS50-217ENST00000485140 TMED7-TICAM2A0A0A6YYA0 188 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 TMEM213A2RRL7 107 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 C21orf140B9A014 251 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 SLC22A1O15245 554 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 APOMO95445 188 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 IL6P05231 212 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 TFPTP0C1Z6 253 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 METTL15P1P0C7V9 234 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 UBBP0CG47 229 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 DEFA4P12838 97 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 CXCL3P19876 107 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 NFYAP23511 347 aaPredicted RBP0.44□□□□□ -2.34
VPS50-217ENST00000485140 POLR2GP62487 172 aaKnown RBP eCLIP0.44□□□□□ -2.34
VPS50-217ENST00000485140 RPL30P62888 115 aaKnown RBP0.44□□□□□ -2.34
VPS50-217ENST00000485140 JOSD1Q15040 202 aaPredicted RBP0.44□□□□□ -2.34
VPS50-217ENST00000485140 C4orf26Q17RF5 130 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 C10orf55Q5SWW7 151 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 SDHAF4Q5VUM1 108 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 DNM1P34Q6PK57 102 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 C5orf46Q6UWT4 87 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 SYCE1Q8N0S2 351 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 C15orf53Q8NAA6 179 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 JOSD2Q8TAC2 188 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 SLC37A2Q8TED4 501 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 GNPNAT1Q96EK6 184 aaPredicted RBP0.44□□□□□ -2.34
VPS50-217ENST00000485140 REG4Q9BYZ8 158 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 YIPF3Q9GZM5 350 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 SPACA1Q9HBV2 294 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 TREM1Q9NP99 234 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 FKBP14Q9NWM8 211 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 RSL24D1Q9UHA3 163 aaKnown RBP0.44□□□□□ -2.34
VPS50-217ENST00000485140 AK3Q9UIJ7 227 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 PRELID1Q9Y255 219 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 TP53TG1Q9Y2A0 90 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 GPR98Q8WXG9 6306 aa0.44□□□□□ -2.34
VPS50-217ENST00000485140 AHNAKQ09666 5890 aaKnown RBP0.43□□□□□ -2.34
VPS50-217ENST00000485140 CACNA1BQ00975 2339 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 SYNRGQ9UMZ2 1314 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 SMARCA4P51532 1647 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 TRAV14DV4A0A0A6YYC5 116 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 TRBV10-2A0A0K0K1G8 114 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 COX7A2LO14548 114 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 ADAP1O75689 374 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 RD3LP0DJH9 198 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 CSN1S1P47710 185 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 RAB13P51153 203 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 FXYD2P54710 66 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 DHFR2Q86XF0 187 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 GID4Q8IVV7 300 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 LINC00471Q8N535 108 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 UBL4BQ8N7F7 174 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 HAVCR2Q8TDQ0 301 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 ASB13Q8WXK3 278 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 DHRS9Q9BPW9 319 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 DCUN1D5Q9BTE7 237 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 CHMP4BQ9H444 224 aaKnown RBP0.43□□□□□ -2.34
VPS50-217ENST00000485140 HRASLSQ9HDD0 168 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 GPR84Q9NQS5 396 aa0.43□□□□□ -2.34
VPS50-217ENST00000485140 ERICH2A1L162 156 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 FUOMA2VDF0 154 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 IBA57-AS1B1ANH7 110 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 SMLR1H3BR10 107 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 HPGDSO60760 199 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 PMP2P02689 132 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 SULT1A3P0DMM9 295 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 SULT1A4P0DMN0 295 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 HIST1H1CP16403 213 aaKnown RBP0.42□□□□□ -2.34
VPS50-217ENST00000485140 CDC34P49427 236 aaPredicted RBP0.42□□□□□ -2.34
VPS50-217ENST00000485140 FAM27BQ5VT28 67 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 FAM78BQ5VT40 261 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 TEX36Q5VZQ5 186 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 SBSNQ6UWP8 590 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 HIST2H3AQ71DI3 136 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 SLC51BQ86UW2 128 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 CD302Q8IX05 232 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 BOD1L2Q8IYS8 172 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 RIBC1Q8N443 379 aaPredicted RBP0.42□□□□□ -2.34
VPS50-217ENST00000485140 ZNF565Q8N9K5 539 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 C9orf163Q8N9P6 203 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 ZNF439Q8NDP4 499 aa0.42□□□□□ -2.34
VPS50-217ENST00000485140 OR2T27Q8NH04 317 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms