RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 MOB1BQ7L9L4 216 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 OCIAD1Q9NX40 245 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 ACTL6BO94805 426 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 P04436 131 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 GALMQ96C23 342 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 GNB1LQ9BYB4 327 aa15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 SEPSECSQ9HD40 501 aaKnown RBP15.67■□□□□ 0.1
CCDC88B-207ENST00000479965 LOC102724200A0A096LPH7 203 aaPredicted RBP15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 PRRX1P54821 245 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 VWC2Q2TAL6 325 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 PQLC2Q6ZP29 291 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 RFESDQ8TAC1 157 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 RAB1CQ92928 201 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 MS4A5Q9H3V2 200 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 FAM166BA8MTA8 275 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 GCHFRP30047 84 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 BRWD1-AS2P59051 145 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 TRIP6Q15654 476 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 TREML4Q6UXN2 200 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 OR4P4Q8NGL7 312 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 ST6GALNAC6Q969X2 333 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 SFXN3Q9BWM7 321 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 TP73-AS1Q9UF72 201 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 V9GYV3 84 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 IGHV1-45A0A0A0MS14 117 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 CDIPTO14735 213 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 CA2P00918 260 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 MGST1P10620 155 aaKnown RBP15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 GNG4P50150 75 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 CCL7P80098 99 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 RELBQ01201 579 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 CLEC7AQ9BXN2 247 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 GCM1Q9NP62 436 aa15.66■□□□□ 0.1
CCDC88B-207ENST00000479965 GDF1P27539 372 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 RPL19P84098 196 aaKnown RBP15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 CENPWQ5EE01 88 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 NIT1Q86X76 327 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 TPRX1Q8N7U7 411 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 LOXL4Q96JB6 756 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 MGST2Q99735 147 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 A0A1W2PQM1 296 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 C2CD4DB7Z1M9 353 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 TFF1P04155 84 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 SRD5A2P31213 254 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 PLP2Q04941 152 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 VKORC1L1Q8N0U8 176 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 ABHD12Q8N2K0 398 aa15.65■□□□□ 0.1
CCDC88B-207ENST00000479965 DNPH1O43598 174 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 CA1P00915 261 aaPredicted RBP15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 CGAP01215 116 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 GRPP07492 148 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 CRYBB3P26998 211 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 PRR31Q5SQ13 230 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 GGTLC1Q9BX51 225 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 YLPM1P49750 1951 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 TRAV9-1A0A075B6T8 112 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 IGHV2OR16-5A0A0B4J2B6 119 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 IGHV5-10-1A0A0J9YXX1 117 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 OR5B21A6NL26 309 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 LINC00473A8K010 186 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 RAB29O14966 203 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 AESQ08117 197 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 MRGPRDQ8TDS7 321 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 TSKUQ8WUA8 353 aa15.64■□□□□ 0.09
CCDC88B-207ENST00000479965 BMPR1BO00238 502 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 P0C879 139 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 TNFSF4P23510 183 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 DCAF12Q5T6F0 453 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 MRPL14Q6P1L8 145 aaKnown RBP15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 TMEM136Q6ZRR5 245 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 TUSC5Q8IXB3 177 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 KCNE4Q8WWG9 221 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 C12orf77C9JDV5 145 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 J3QT63 122 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 OR9G9P0C7N8 305 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 OR10J3Q5JRS4 329 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 CXorf67Q86X51 503 aaPredicted RBP15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 TXNDC17Q9BRA2 123 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 HELTA6NFD8 242 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 OPRK1P41145 380 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 GABRA2P47869 451 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 ZNF718Q3SXZ3 478 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 PRAMEF5Q5TYX0 476 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 PRAMEF6Q5VXH4 476 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 WDR73Q6P4I2 378 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 PSG11Q9UQ72 335 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 MPC1Q9Y5U8 109 aa15.63■□□□□ 0.09
CCDC88B-207ENST00000479965 DOCK10Q96BY6 2186 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 TRBV9A0A0B4J1U6 114 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 HSBP1O75506 76 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 COX6A1P12074 109 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 K7EP13 123 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 PSPNO60542 156 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 IGHV3-13P01766 116 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 IGHV3-7P01780 117 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 HBZP02008 142 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 CX3CL1P78423 397 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 LDLRAD2Q5SZI1 272 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 NHLRC2Q8NBF2 726 aa15.62■□□□□ 0.09
CCDC88B-207ENST00000479965 IMMP1LQ96LU5 166 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms