RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	RBFOX2	O43251	390 aa	Known RBP eCLIP	18.56	■□□□□ 0.56	3e-14	■■■■■ 31.7
CPNE1-223	ENST00000475146	NOL3	O60936	208 aa	Known RBP	18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	HSPB1	P04792	205 aa	Known RBP	18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	OR9G9	P0C7N8	305 aa		18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	DEFA5	Q01523	94 aa		18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	ADAD2	Q8NCV1	583 aa	Known RBP	18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	AIFM2	Q9BRQ8	373 aa		18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	ZMAT5	Q9UDW3	170 aa	Known RBP	18.56	■□□□□ 0.56
CPNE1-223	ENST00000475146	WI2-2373I1.2	A0A1W2PRP0	233 aa		18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146		K7EIL1	84 aa		18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146	OVOL1	O14753	267 aa		18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146	RLN1	P04808	185 aa		18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146	RPL5	P46777	297 aa	Known RBP	18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146	DGCR2	P98153	550 aa		18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146	HRASLS	Q9HDD0	168 aa		18.55	■□□□□ 0.56
CPNE1-223	ENST00000475146	HPRT1	P00492	218 aa		18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	RPL27A	P46776	148 aa	Known RBP	18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	TMBIM6	P55061	237 aa		18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	CMTM1	Q8IZ96	169 aa		18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	CD300LF	Q8TDQ1	290 aa		18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	DLX4	Q92988	240 aa	Predicted RBP	18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	FYTTD1	Q96QD9	318 aa	Known RBP	18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	BCL7B	Q9BQE9	202 aa		18.54	■□□□□ 0.56
CPNE1-223	ENST00000475146	PRKDC	P78527	4128 aa	Known RBP	18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	HMX3	A6NHT5	357 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	GPR31	O00270	319 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	PGLYRP1	O75594	196 aa	Predicted RBP	18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	BRI3	O95415	125 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	MAS1L	P35410	378 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	TAS2R31	P59538	309 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	RPL8	P62917	257 aa	Known RBP	18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	OR4A47	Q6IF82	309 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	OR52I2	Q8NH67	350 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	OR4A5	Q8NH83	315 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	MIXL1	Q9H2W2	232 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	BET1L	Q9NYM9	111 aa		18.53	■□□□□ 0.56
CPNE1-223	ENST00000475146	ANKRD34B	A5PLL1	514 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146		M0QYG6	137 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	S1PR2	O95136	353 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	PRH1	P02810	166 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	NQO2	P16083	231 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	LAX1	Q8IWV1	398 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	C15orf40	Q8WUR7	153 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	PLEKHA2	Q9HB19	425 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	RANGRF	Q9HD47	186 aa	Predicted RBP	18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	KLK11	Q9UBX7	282 aa		18.52	■□□□□ 0.56
CPNE1-223	ENST00000475146	DPPA5	A6NC42	116 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	CTDSP2	O14595	271 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	HLA-G	P17693	338 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	S100G	P29377	79 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	ECI1	P42126	302 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	PHLDA2	Q53GA4	152 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	DEFB121	Q5J5C9	76 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	VAX1	Q5SQQ9	334 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	SLC25A42	Q86VD7	318 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	DMBX1	Q8NFW5	382 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	USMG5	Q96IX5	58 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	ABHD1	Q96SE0	405 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	COMMD9	Q9P000	198 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	CCDC59	Q9P031	241 aa	Known RBP	18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	SCOC	Q9UIL1	159 aa		18.51	■□□□□ 0.55
CPNE1-223	ENST00000475146	TEX22	C9J3V5	150 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	TPPP	O94811	219 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	IFNA6	P05013	189 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	RPA2	P15927	270 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	ERVK-16	P61578	105 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	RHOG	P84095	191 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	RNASE10	Q5GAN6	216 aa	Known RBP	18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	LPCAT3	Q6P1A2	487 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	TTC9C	Q8N5M4	171 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	DYNC2LI1	Q8TCX1	351 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	TMEM140	Q9NV12	185 aa		18.5	■□□□□ 0.55
CPNE1-223	ENST00000475146	SAP30	O75446	220 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	RBMXL2	O75526	392 aa	Known RBP	18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	IL6R	P08887	468 aa	Predicted RBP	18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	MYOD1	P15172	320 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	ZP3	P21754	424 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	F2R	P25116	425 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	INSL3	P51460	131 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	POU2AF1	Q16633	256 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	FCAMR	Q8WWV6	532 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	DGCR14	Q96DF8	476 aa	Known RBP	18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	AKIP1	Q9NQ31	210 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	MTFP1	Q9UDX5	166 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	ZNF257	Q9Y2Q1	563 aa		18.49	■□□□□ 0.55
CPNE1-223	ENST00000475146	FAM223B	A6NKX1	122 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146		E7EUB6	86 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	ZNF735	P0CB33	412 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	ZNF45	Q02386	682 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	ZNF343	Q6P1L6	599 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	FAM223A	Q8IWN6	122 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	ISOC1	Q96CN7	298 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	SLC2A9	Q9NRM0	540 aa		18.48	■□□□□ 0.55
CPNE1-223	ENST00000475146	TRAV3	A0A0B4J244	114 aa		18.47	■□□□□ 0.55
CPNE1-223	ENST00000475146		A0A1B0GW64	132 aa		18.47	■□□□□ 0.55
CPNE1-223	ENST00000475146		H3BMQ9	156 aa		18.47	■□□□□ 0.55
CPNE1-223	ENST00000475146	UPK2	O00526	184 aa		18.47	■□□□□ 0.55
CPNE1-223	ENST00000475146	CD3D	P04234	171 aa		18.47	■□□□□ 0.55
CPNE1-223	ENST00000475146	LPAR6	P43657	344 aa		18.47	■□□□□ 0.55
CPNE1-223	ENST00000475146	ATP5G2	Q06055	141 aa		18.47	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms