RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 BRWD1-AS2P59051 145 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 HERV-K104P61576 105 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 RPL30P62888 115 aaKnown RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SUPT4H1P63272 117 aaKnown RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 Q3ZCU0 254 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 PHLDA2Q53GA4 152 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 IL17RELQ6ZVW7 336 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 KCTD9Q7L273 389 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 C8orf31Q8N9H6 132 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 BEND2Q8NDZ0 799 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 OR13D1Q8NGV5 346 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 R3HDM4Q96D70 268 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SLC5A7Q9GZV3 580 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 HEXA-AS1Q9H8Q6 139 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 RAB9BQ9NP90 201 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 RBM7Q9Y580 266 aaKnown RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 TRAV14DV4A0A0A6YYC5 116 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 IGHV1-69DA0A0B4J2H0 117 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 C9orf170A2RU37 121 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 LINC00473A8K010 186 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SNRPGP15A8MWD9 76 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 J3QLI3 93 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 RAB29O14966 203 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 NPFFO15130 113 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 PRAF2O60831 178 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SLC22A5O76082 557 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 LY6G6DO95868 133 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 IGHV1-69P01742 117 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SAA4P35542 130 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 PIGPP57054 158 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 ANKRD55Q3KP44 614 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SP6Q3SY56 376 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 NCR3LG1Q68D85 454 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF833PQ6ZTB9 187 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 Q71RC1 249 aaPredicted RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SLC25A42Q86VD7 318 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 C12orf45Q8N5I9 185 aaPredicted RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF645Q8N7E2 425 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 C11orf44Q8N8P7 122 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 OR10X1Q8NGY0 326 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 LRRC20Q8TCA0 184 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 C22orf15Q8WYQ4 148 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 LINC00476Q8WZB0 136 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SLC25A21Q9BQT8 299 aaPredicted RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 GON7Q9BXV9 100 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 SLC2A9Q9NRM0 540 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 C11orf21Q9P2W6 132 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 NUP50Q9UKX7 468 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 KCNS2Q9ULS6 477 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 GAB2Q9UQC2 676 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 DOCK11Q5JSL3 2073 aa3.8□□□□□ -1.8
SF3B1-208ENST00000470268 FLNAP21333 2647 aaKnown RBP3.8□□□□□ -1.8
SF3B1-208ENST00000470268 CSPG4Q6UVK1 2322 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CREBBPQ92793 2442 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 FXYD6-FXYD2A0A087WZ82 144 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 A0A0U1RQK1 487 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 MDFIC2A0A1B0GVS7 189 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 A0A1W2PPI3 338 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 FAM90A9PA6NNJ1 464 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 M0R1X1 148 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 GPR31O00270 319 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 TOR1AO14656 332 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 ARPC5O15511 151 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 PGLYRP1O75594 196 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 SCO1O75880 301 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 OR2A4O95047 310 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 OPN1MWP04001 364 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CTSDP07339 412 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CT45A6P0DMU7 189 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CT45A5P0DMU8 189 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CT45A7P0DMV0 189 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 OPN1MW2P0DN77 364 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 OPN1MW3P0DN78 364 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 CD99P14209 185 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 PGAM2P15259 253 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 HTR1DP28221 377 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 DUTP33316 252 aaKnown RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 GPR12P47775 334 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 RAB7AP51149 207 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 ARHGDIBP52566 201 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 PRRX1P54821 245 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 FHL2Q14192 279 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 SURF2Q15527 256 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 SSX2Q16385 188 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 AARDQ4LEZ3 155 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 FAM120AOSQ5T036 256 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 GPR157Q5UAW9 335 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 FAM90A2PQ658T7 463 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 LYG2Q86SG7 212 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 ZDHHC22Q8N966 263 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 ZNF383Q8NA42 475 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 RTN4IP1Q8WWV3 396 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 DDB2Q92466 427 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 HYLS1Q96M11 299 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 OR2A7Q96R45 310 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 MRPL20Q9BYC9 149 aaKnown RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 GPN1Q9HCN4 374 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-208ENST00000470268 YAE1D1Q9NRH1 226 aa3.79□□□□□ -1.8
SF3B1-208ENST00000470268 SERTAD4Q9NUC0 356 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms