RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 A0A0A6YYD4 124 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 TRAV10A0A0B4J240 114 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 TRAV25A0A0B4J276 109 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 MPTX1A8MV57 137 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 TEX22C9J3V5 150 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 C11orf94C9JXX5 98 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 TSPAN4O14817 238 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 PDCD6O75340 191 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 FAM107AO95990 144 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 LALBAP00709 142 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 REG1AP05451 166 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 CLEC3BP05452 202 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 CTSDP07339 412 aaPredicted RBP3.78□□□□□ -1.8
PTPN4-209ENST00000469511 AREGP15514 252 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 BDKRB2P30411 391 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 FUSP35637 526 aaKnown RBP eCLIP3.78□□□□□ -1.8
PTPN4-209ENST00000469511 TFPI2P48307 235 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 PRSS8Q16651 343 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 AMIGO2Q86SJ2 522 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 PDPNQ86YL7 162 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 ACBD7Q8N6N7 88 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 NECAP1Q8NC96 275 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 ASB9Q96DX5 294 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 HARBI1Q96MB7 349 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 S100A13Q99584 98 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 NICN1Q9BSH3 213 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 ZNF430Q9H8G1 570 aaPredicted RBP3.78□□□□□ -1.8
PTPN4-209ENST00000469511 RAB9BQ9NP90 201 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 TMEM138Q9NPI0 162 aa3.78□□□□□ -1.8
PTPN4-209ENST00000469511 EXOGQ9Y2C4 368 aaKnown RBP3.78□□□□□ -1.8
PTPN4-209ENST00000469511 EXOSC1Q9Y3B2 195 aaKnown RBP3.78□□□□□ -1.8
PTPN4-209ENST00000469511 DEFB131BA0A096LNP1 70 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 IGHV3-49A0A0A0MS15 119 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 TCRBV3S1A0A5B6 114 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 CGB1A6NKQ9 187 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 TMEM212A6NML5 194 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 ITGB1BP1O14713 200 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 CA11O75493 328 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 CRTAPO75718 401 aaPredicted RBP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 NAPSAO96009 420 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 CA1P00915 261 aaPredicted RBP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 CD74P04233 296 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 SAA1P0DJI8 122 aaPredicted RBP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 P0DMU3 169 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 FAM231AP0DMU4 169 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 FAM231CP0DMU5 169 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 HTR2CP28335 458 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 GPR183P32249 361 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 FAM3BP58499 235 aaPredicted RBP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 RPS11P62280 158 aaKnown RBP eCLIP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 TMED1Q13445 227 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 FAM106AQ4KMX7 169 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 C1orf134Q5TEV5 83 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF554Q86TJ5 538 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 AQP12AQ8IXF9 295 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 SLC38A6Q8IZM9 456 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 VKORC1L1Q8N0U8 176 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 JAGN1Q8N5M9 183 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 FAM24BQ8N5W8 94 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 SETD9Q8NE22 299 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 OR8J1Q8NGP2 316 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 NRBF2Q96F24 287 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 SPAG8Q99932 426 aaPredicted RBP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 THTPAQ9BU02 230 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 RNF126Q9BV68 326 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 PRRG3Q9BZD7 231 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 HRH4Q9H3N8 390 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 C5orf66Q9H5L9 145 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 SPACA1Q9HBV2 294 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 SDHAF2Q9NX18 166 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 MRPL27Q9P0M9 148 aaKnown RBP3.77□□□□□ -1.81
PTPN4-209ENST00000469511 MDFICQ9P1T7 246 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 GMPPBQ9Y5P6 360 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 VPS13BQ7Z7G8 4022 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 HMCN2Q8NDA2 5059 aa3.77□□□□□ -1.81
PTPN4-209ENST00000469511 IGHV3OR16-13A0A075B7E8 117 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 IGHV3-74A0A0B4J1X5 117 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 EPM2AB3EWF7 344 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 ZNF780AO75290 641 aaPredicted RBP3.76□□□□□ -1.81
PTPN4-209ENST00000469511 CRYZL1O95825 349 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 IFNA10P01566 189 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 APOA2P02652 100 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 AMBPP02760 352 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 GLAP06280 429 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 LIMS3P0CW19 117 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 LIMS4P0CW20 117 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 UBE2KP61086 200 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 TMEM187Q14656 261 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 OR2G6Q5TZ20 316 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 LEMD1Q68G75 181 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 AWAT2Q6E213 333 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 SSX9Q7RTT3 188 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 SPATA12Q7Z6I5 190 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 SPATA24Q86W54 205 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 SYS1Q8N2H4 156 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 GBGT1Q8N5D6 347 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 ZFP41Q8N8Y5 198 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 TEX45Q8NA69 505 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 GPR148Q8TDV2 347 aa3.76□□□□□ -1.81
PTPN4-209ENST00000469511 DNAJC9Q8WXX5 260 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms