RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 ZNF695Q8IW36 515 aa13.83□□□□□ -0.2
CPSF4-209ENST00000465132 C5orf56Q8N8D9 126 aa13.83□□□□□ -0.2
CPSF4-209ENST00000465132 OR2A7Q96R45 310 aa13.83□□□□□ -0.2
CPSF4-209ENST00000465132 NUDT15Q9NV35 164 aa13.83□□□□□ -0.2
CPSF4-209ENST00000465132 CACFD1Q9UGQ2 172 aa13.83□□□□□ -0.2
CPSF4-209ENST00000465132 RAMP3O60896 148 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 PEX14O75381 377 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 DHFRP00374 187 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 MAS1LP35410 378 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 LINC00205P59089 165 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 POU2AF1Q16633 256 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 PPP1R27Q86WC6 154 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 FAM219AQ8IW50 185 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 MMD2Q8IY49 270 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 LGI3Q8N145 548 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 FAM71E2Q8N5Q1 922 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 RNASE11Q8TAA1 199 aaKnown RBP13.82□□□□□ -0.2
CPSF4-209ENST00000465132 R3HDM4Q96D70 268 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 RRNAD1Q96FB5 475 aaKnown RBP13.82□□□□□ -0.2
CPSF4-209ENST00000465132 GPHA2Q96T91 129 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 GON7Q9BXV9 100 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 PLSCR3Q9NRY6 295 aa13.82□□□□□ -0.2
CPSF4-209ENST00000465132 DUXBA0A1W2PPF3 345 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 MARCH11A6NNE9 402 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 SLC25A17O43808 307 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 CHST1O43916 411 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 PRAF2O60831 178 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 SNAPC5O75971 98 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 CDS2O95674 445 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 HLA-DRB1P01911 266 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 OR5AC1P0C628 307 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 F2RL1P55085 397 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 RGS21Q2M5E4 152 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 H2BFWTQ7Z2G1 175 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 FOXRED2Q8IWF2 684 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 Q8N9W7 124 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 ADAD2Q8NCV1 583 aaKnown RBP13.81□□□□□ -0.2
CPSF4-209ENST00000465132 COQ8AQ8NI60 647 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 RBPMSQ93062 196 aaKnown RBP13.81□□□□□ -0.2
CPSF4-209ENST00000465132 TP53RKQ96S44 253 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 GPN1Q9HCN4 374 aaPredicted RBP13.81□□□□□ -0.2
CPSF4-209ENST00000465132 FKBP11Q9NYL4 201 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 BET1LQ9NYM9 111 aa13.81□□□□□ -0.2
CPSF4-209ENST00000465132 S1PR2O95136 353 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 SFT2D2O95562 160 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 HLA-AP01891 365 aaKnown RBP13.8□□□□□ -0.2
CPSF4-209ENST00000465132 PRB2P02812 416 aaPredicted RBP13.8□□□□□ -0.2
CPSF4-209ENST00000465132 OR4E1P0C645 316 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 VSIG10L2P0DP72 767 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 MECP2P51608 486 aaKnown RBP13.8□□□□□ -0.2
CPSF4-209ENST00000465132 AKR1C2P52895 323 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 C9orf152Q5JTZ5 239 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 NRARPQ7Z6K4 114 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM56Q96MV1 263 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 FBXL15Q9H469 300 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM56-RWDD3S4R434 201 aa13.8□□□□□ -0.2
CPSF4-209ENST00000465132 TRAV6A0A075B6T7 132 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 KBTBD11O94819 623 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 CNIH1O95406 144 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 KRASP01116 189 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 SAA1P0DJI8 122 aaPredicted RBP13.79□□□□□ -0.2
CPSF4-209ENST00000465132 BRWD1-AS2P59051 145 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM267Q0VDI3 215 aaPredicted RBP13.79□□□□□ -0.2
CPSF4-209ENST00000465132 ZNF585BQ52M93 769 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 ZNF562Q6V9R5 426 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 SLC35E3Q7Z769 313 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 LYG2Q86SG7 212 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 MRPL41Q8IXM3 137 aaKnown RBP13.79□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM167AQ8TBQ9 72 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 GLYATL2Q8WU03 294 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM230Q96A57 120 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 PHB2Q99623 299 aa13.79□□□□□ -0.2
CPSF4-209ENST00000465132 AP4M1O00189 453 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 DUS4LO95620 317 aaKnown RBP13.78□□□□□ -0.2
CPSF4-209ENST00000465132 IGLV2-23P01705 113 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 PPP1R1AQ13522 171 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM187Q14656 261 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 SP6Q3SY56 376 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM268Q5VZI3 342 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 OR4A47Q6IF82 309 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 REC114Q7Z4M0 266 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 PUSL1Q8N0Z8 303 aaKnown RBP13.78□□□□□ -0.2
CPSF4-209ENST00000465132 Q8N2B8 174 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 MINDY2Q8NBR6 621 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 RITA1Q96K30 269 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 ZNF702PQ9H963 129 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 TMEM140Q9NV12 185 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 PRNDQ9UKY0 176 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 FLVCR2Q9UPI3 526 aa13.78□□□□□ -0.2
CPSF4-209ENST00000465132 A0A0B4J2A0 478 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 C9orf170A2RU37 121 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 SRRM4A7MD48 611 aaKnown RBP13.77□□□□□ -0.21
CPSF4-209ENST00000465132 INMT-MINDY4F8WBC2 141 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 IFNA21P01568 189 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 IGHG2P01859 326 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 IL5P05113 134 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 VDAC1P21796 283 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 CNTFRP26992 372 aa13.77□□□□□ -0.21
CPSF4-209ENST00000465132 VDAC2P45880 294 aaPredicted RBP13.77□□□□□ -0.21
CPSF4-209ENST00000465132 RPL8P62917 257 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms