RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 OR2A7Q96R45 310 aa16.95■□□□□ 0.3
USP4-208ENST00000464168 ST6GALNAC5Q9BVH7 336 aa16.95■□□□□ 0.3
USP4-208ENST00000464168 MRPS7Q9Y2R9 242 aaKnown RBP16.95■□□□□ 0.3
USP4-208ENST00000464168 IGKV1D-13A0A0B4J2D9 117 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 TMEM213A2RRL7 107 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 KBTBD11O94819 623 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 ZNF735P0CB33 412 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 IGKV1-13P0DP09 117 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 ARL3P36405 182 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 RPL27AP46776 148 aaKnown RBP16.94■□□□□ 0.3
USP4-208ENST00000464168 BRWD1-AS2P59051 145 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 CDNFQ49AH0 187 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 ZNF57Q68EA5 555 aaPredicted RBP16.94■□□□□ 0.3
USP4-208ENST00000464168 CLEC19AQ6UXS0 136 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 PUSL1Q8N0Z8 303 aaKnown RBP16.94■□□□□ 0.3
USP4-208ENST00000464168 TMEM167AQ8TBQ9 72 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 FYTTD1Q96QD9 318 aaKnown RBP16.94■□□□□ 0.3
USP4-208ENST00000464168 OVOL2Q9BRP0 275 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 ATG5Q9H1Y0 275 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 MLXQ9UH92 298 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 S4R3C0 116 aa16.94■□□□□ 0.3
USP4-208ENST00000464168 DPPA5A6NC42 116 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 SLC22A5O76082 557 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 CRYGCP07315 174 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 CTXN2P0C2S0 81 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 AREGP15514 252 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 CD36P16671 472 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 EIF4EBP1Q13541 118 aaPredicted RBP16.93■□□□□ 0.3
USP4-208ENST00000464168 KLK9Q2XQG4 91 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 NR2C2APQ86WQ0 139 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 VSTM2AQ8TAG5 236 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 KLK9Q9UKQ9 250 aa16.93■□□□□ 0.3
USP4-208ENST00000464168 ZNF320A2RRD8 509 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 RAB3BP20337 219 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 MAS1LP35410 378 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 ARL6IP1Q15041 203 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 FAM106AQ4KMX7 169 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 UXS1Q8NBZ7 420 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 OR52B4Q8NGK2 314 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 OR4S2Q8NH73 311 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 NRG4Q8WWG1 115 aa16.92■□□□□ 0.3
USP4-208ENST00000464168 HSD17B10Q99714 261 aaKnown RBP16.92■□□□□ 0.3
USP4-208ENST00000464168 A8MWP6 167 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 MYL9P24844 172 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 PSMB6P28072 239 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 HACD4Q5VWC8 232 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 TCTEX1D2Q8WW35 142 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 LINC00476Q8WZB0 136 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 GGTLC1Q9BX51 225 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 DCSTAMPQ9H295 470 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 SPATA2Q9UM82 520 aa16.91■□□□□ 0.3
USP4-208ENST00000464168 SCAF4O95104 1147 aaKnown RBP16.9■□□□□ 0.3
USP4-208ENST00000464168 CTRB1P17538 263 aa16.9■□□□□ 0.3
USP4-208ENST00000464168 TBCEQ15813 527 aaPredicted RBP16.9■□□□□ 0.3
USP4-208ENST00000464168 CTRB2Q6GPI1 263 aa16.9■□□□□ 0.3
USP4-208ENST00000464168 CNIH2Q6PI25 160 aa16.9■□□□□ 0.3
USP4-208ENST00000464168 MFSD4AQ8N468 514 aa16.9■□□□□ 0.3
USP4-208ENST00000464168 EEF1AKMT3Q96AZ1 226 aa16.9■□□□□ 0.3
USP4-208ENST00000464168 NDUFB11Q9NX14 153 aa16.9■□□□□ 0.3
USP4-208ENST00000464168 FRAS1Q86XX4 4008 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 LOC102724200A0A096LPH7 203 aaPredicted RBP16.89■□□□□ 0.29
USP4-208ENST00000464168 TRDV1A0A1B0GX56 115 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 DHFRP00374 187 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 MYOD1P15172 320 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 TM4SF20Q53R12 229 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 ZNF367Q7RTV3 350 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 NUDCD2Q8WVJ2 157 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 GPHA2Q96T91 129 aa16.89■□□□□ 0.29
USP4-208ENST00000464168 CLEC3BP05452 202 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 HIST1H1BP16401 226 aaKnown RBP16.88■□□□□ 0.29
USP4-208ENST00000464168 ANKRD55Q3KP44 614 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 OR4A47Q6IF82 309 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 BTNL8Q6UX41 500 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 UNQ9165/PRO28630Q6UXU0 137 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 SSX9Q7RTT3 188 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 TAS2R8Q9NYW2 309 aa16.88■□□□□ 0.29
USP4-208ENST00000464168 IGLV11-55A0A075B6I3 123 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 SMIM30A4D0T7 59 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 TMEM235A6NFC5 223 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 MFSD2BA6NFX1 497 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 CGB1A6NKQ9 187 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 ANKRD65E5RJM6 399 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 HRASP01112 189 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 REG1AP05451 166 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 RPL8P62917 257 aaKnown RBP16.87■□□□□ 0.29
USP4-208ENST00000464168 C22orf42Q6IC83 251 aa16.87■□□□□ 0.29
USP4-208ENST00000464168 TRBV7-1A0A0A6YYK4 115 aa16.86■□□□□ 0.29
USP4-208ENST00000464168 SSX5O60225 188 aa16.86■□□□□ 0.29
USP4-208ENST00000464168 C8orf88P0DMB2 117 aa16.86■□□□□ 0.29
USP4-208ENST00000464168 HLA-GP17693 338 aa16.86■□□□□ 0.29
USP4-208ENST00000464168 ZNF66Q6ZN08 573 aa16.86■□□□□ 0.29
USP4-208ENST00000464168 ANXA10Q9UJ72 324 aa16.86■□□□□ 0.29
USP4-208ENST00000464168 TRAV25A0A0B4J276 109 aa16.85■□□□□ 0.29
USP4-208ENST00000464168 CXorf65A6NEN9 183 aa16.85■□□□□ 0.29
USP4-208ENST00000464168 LY6G6CO95867 125 aa16.85■□□□□ 0.29
USP4-208ENST00000464168 DEFA4P12838 97 aa16.85■□□□□ 0.29
USP4-208ENST00000464168 GALP22466 123 aa16.85■□□□□ 0.29
USP4-208ENST00000464168 EWSR1Q01844 656 aaKnown RBP eCLIP16.85■□□□□ 0.29
USP4-208ENST00000464168 MARC2Q969Z3 335 aa16.85■□□□□ 0.29
USP4-208ENST00000464168 CXorf58Q96LI9 332 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms