RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 KBTBD11O94819 623 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 OR2C1O95371 312 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 IGHV3-23P01764 117 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 IL6RP08887 468 aaPredicted RBP12.12□□□□□ -0.47
COL7A1-204ENST00000462475 HACD4Q5VWC8 232 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 SLC25A42Q86VD7 318 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 OR4S2Q8NH73 311 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 CCDC140Q96MF4 163 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 FBXL7Q9UJT9 491 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 S4R3C0 116 aa12.12□□□□□ -0.47
COL7A1-204ENST00000462475 TMEM235A6NFC5 223 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 NPIPB5A8MRT5 1133 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 OR11H12B2RN74 326 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 GGCTO75223 188 aaKnown RBP12.11□□□□□ -0.47
COL7A1-204ENST00000462475 JTBO76095 146 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 NDUFB8O95169 186 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 CTXN2P0C2S0 81 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 KIR2DS2P43631 304 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 RPL27AP46776 148 aaKnown RBP12.11□□□□□ -0.47
COL7A1-204ENST00000462475 BRWD1-AS2P59051 145 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 EIF4EBP1Q13541 118 aaPredicted RBP12.11□□□□□ -0.47
COL7A1-204ENST00000462475 ARL6IP1Q15041 203 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 PUSL1Q8N0Z8 303 aaKnown RBP12.11□□□□□ -0.47
COL7A1-204ENST00000462475 TMEM167AQ8TBQ9 72 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 TCTEX1D2Q8WW35 142 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 CNBD2Q96M20 576 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 FANCD2OSQ96PS1 177 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 FYTTD1Q96QD9 318 aaKnown RBP12.11□□□□□ -0.47
COL7A1-204ENST00000462475 OR2A7Q96R45 310 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 SPATA2Q9UM82 520 aa12.11□□□□□ -0.47
COL7A1-204ENST00000462475 DPPA5A6NC42 116 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 LGALS9O00182 355 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 AREGP15514 252 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 FAM209BQ5JX69 171 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 CNIH2Q6PI25 160 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 CLEC19AQ6UXS0 136 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 IZUMO2Q6UXV1 221 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 IL17DQ8TAD2 202 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 GPHA2Q96T91 129 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 DCSTAMPQ9H295 470 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 TAS2R8Q9NYW2 309 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 TECRQ9NZ01 308 aaKnown RBP12.1□□□□□ -0.47
COL7A1-204ENST00000462475 BLOC1S6Q9UL45 172 aa12.1□□□□□ -0.47
COL7A1-204ENST00000462475 TMEM213A2RRL7 107 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 SSX5O60225 188 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 SLC22A5O76082 557 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 ZNF735P0CB33 412 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 MYOD1P15172 320 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 ARL3P36405 182 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 SSX9Q7RTT3 188 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 TMEM61Q8N0U2 210 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 VSTM2AQ8TAG5 236 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 HSD17B10Q99714 261 aaKnown RBP12.09□□□□□ -0.47
COL7A1-204ENST00000462475 SLC2A9Q9NRM0 540 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 ANXA10Q9UJ72 324 aa12.09□□□□□ -0.47
COL7A1-204ENST00000462475 NOTOA8MTQ0 251 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 CRYGCP07315 174 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 GALP22466 123 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 CBLN1P23435 193 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 PSMB6P28072 239 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 GNG2P59768 71 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 GPHB5Q86YW7 130 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 MFSD4AQ8N468 514 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 MLXQ9UH92 298 aa12.08□□□□□ -0.48
COL7A1-204ENST00000462475 CGB1A6NKQ9 187 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 A8MWP6 167 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 TNFSF12O43508 249 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 REG1AP05451 166 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 CTRB1P17538 263 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 MAS1LP35410 378 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 KLK9Q2XQG4 91 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 CTRB2Q6GPI1 263 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 ZNF66Q6ZN08 573 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 SLC16A13Q7RTY0 426 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 LGALS14Q8TCE9 139 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 TXNL4BQ9NX01 149 aaKnown RBP12.07□□□□□ -0.48
COL7A1-204ENST00000462475 DAPK2Q9UIK4 370 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 KLK9Q9UKQ9 250 aa12.07□□□□□ -0.48
COL7A1-204ENST00000462475 ZNF320A2RRD8 509 aa12.06□□□□□ -0.48
COL7A1-204ENST00000462475 MFSD2BA6NFX1 497 aa12.06□□□□□ -0.48
COL7A1-204ENST00000462475 SCAF4O95104 1147 aaKnown RBP12.06□□□□□ -0.48
COL7A1-204ENST00000462475 PTHLHP12272 177 aa12.06□□□□□ -0.48
COL7A1-204ENST00000462475 HSPA13P48723 471 aa12.06□□□□□ -0.48
COL7A1-204ENST00000462475 RPL8P62917 257 aaKnown RBP12.06□□□□□ -0.48
COL7A1-204ENST00000462475 ZNF57Q68EA5 555 aaPredicted RBP12.06□□□□□ -0.48
COL7A1-204ENST00000462475 UXS1Q8NBZ7 420 aa12.06□□□□□ -0.48
COL7A1-204ENST00000462475 EEF1AKMT3Q96AZ1 226 aa12.06□□□□□ -0.48
COL7A1-204ENST00000462475 IGLV11-55A0A075B6I3 123 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 SCGNO76038 276 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 DHFRP00374 187 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 HLA-GP17693 338 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 PSMB9P28065 219 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 FGF9P31371 208 aaPredicted RBP12.05□□□□□ -0.48
COL7A1-204ENST00000462475 TIMM50Q3ZCQ8 353 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 UBE2UQ5VVX9 321 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 OR4A47Q6IF82 309 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 SFXN4Q6P4A7 337 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 BTNL8Q6UX41 500 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 UNQ9165/PRO28630Q6UXU0 137 aa12.05□□□□□ -0.48
COL7A1-204ENST00000462475 SECTM1Q8WVN6 248 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms