RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 A0A087WUU8 490 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 A0A1B0GX78 115 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 CPSF4LA6NMK7 179 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 C10orf142B7Z368 130 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 FFAR1O14842 300 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 OR2T1O43869 369 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 KCNK2O95069 426 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 NDUFB2O95178 105 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 RLN2P04090 185 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 SEC11BP0C7V7 166 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 GIMD1P0DJR0 217 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 NELFEP18615 380 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 SDC2P34741 201 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 PRSS3P35030 304 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 OMPP47874 163 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 PSMD7P51665 324 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 CTBP2P56545 445 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 DCDP81605 110 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 PRKCDQ05655 676 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ZNF616Q08AN1 781 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ZNF141Q15928 474 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ZNF181Q2M3W8 571 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 TRMT12Q53H54 448 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 ACTBL2Q562R1 376 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 MRPL2Q5T653 305 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 C12orf73Q69YU5 71 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 XAF1Q6GPH4 301 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 SMARCD3Q6STE5 483 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 CLEC19AQ6UXS0 136 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 UNQ9165/PRO28630Q6UXU0 137 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 Q6ZS52 159 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 FAM19A1Q7Z5A9 133 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 GALNT10Q86SR1 603 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ORMDL3Q8N138 153 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 C10orf111Q8N326 155 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ACBD7Q8N6N7 88 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 MORN4Q8NDC4 146 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 GPR32P1Q8NGA4 272 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 OR52R1Q8NGF1 315 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 OR5M1Q8NGP8 315 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 MCFD2Q8NI22 146 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ZNF563Q8TA94 476 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 DOK4Q8TEW6 326 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ZNF721Q8TF20 911 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 TMEM239Q8WW34 195 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 RTN4IP1Q8WWV3 396 aaPredicted RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 ACOT12Q8WYK0 555 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 YIPF6Q96EC8 236 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 KCTD7Q96MP8 289 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 DERL3Q96Q80 235 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 SPACA5Q96QH8 159 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 CTRCQ99895 268 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 PDCD1LG2Q9BQ51 273 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 TSSK6Q9BXA6 273 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 MRPL20Q9BYC9 149 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 DCSTAMPQ9H295 470 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 SND1-IT1Q9HBX3 110 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 CMC2Q9NRP2 79 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 FKBP14Q9NWM8 211 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 MAT2BQ9NZL9 334 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 MRM2Q9UI43 246 aaKnown RBP2.31□□□□□ -2.04
VPS41-210ENST00000462429 SLC7A11Q9UPY5 501 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 ZNF337Q9Y3M9 751 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 BPTFQ12830 3046 aa2.31□□□□□ -2.04
VPS41-210ENST00000462429 A0A087WUJ7 227 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 A0A1B0GX12 115 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 A0A1W2PQD3 144 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 DAPL1A0PJW8 107 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 ZNF860A6NHJ4 632 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 C9J4A7 227 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 TP53I11O14683 189 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 PHYHO14832 338 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 RGS5O15539 181 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 GATCO43716 136 aaKnown RBP2.3□□□□□ -2.04
VPS41-210ENST00000462429 ENTPD6O75354 484 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 ARL6IP5O75915 188 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 SNAPC5O75971 98 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 CDRT1O95170 752 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 SOX14O95416 240 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 MAS1P04201 325 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 GP1BAP07359 652 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 OCM2P0CE71 109 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 OCMP0CE72 109 aaPredicted RBP2.3□□□□□ -2.04
VPS41-210ENST00000462429 IFI30P13284 250 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 ZNF14P17017 642 aaPredicted RBP2.3□□□□□ -2.04
VPS41-210ENST00000462429 HLA-GP17693 338 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 NTF3P20783 257 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 RPS4Y1P22090 263 aaKnown RBP2.3□□□□□ -2.04
VPS41-210ENST00000462429 GUCA1AP43080 201 aaPredicted RBP2.3□□□□□ -2.04
VPS41-210ENST00000462429 INPP1P49441 399 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 VBP1P61758 197 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 TPBGQ13641 420 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 DEFB133Q30KQ1 61 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 CCDC58Q4VC31 144 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 DNM1P34Q6PK57 102 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 PLEKHG7Q6ZR37 379 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 LINC00337Q8N6G1 96 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 PLPP5Q8NEB5 264 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 OR8G5Q8NG78 346 aa2.3□□□□□ -2.04
VPS41-210ENST00000462429 OR2T4Q8NH00 348 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms