RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 GGTLC1Q9BX51 225 aa11.31□□□□□ -0.6
COL6A3-207ENST00000433762 LINC00574Q9H8X3 128 aa11.31□□□□□ -0.6
COL6A3-207ENST00000433762 NPVFQ9HCQ7 196 aa11.31□□□□□ -0.6
COL6A3-207ENST00000433762 HEYLQ9NQ87 328 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-207ENST00000433762 DSCAML1Q8TD84 2053 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 EP300Q09472 2414 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-207ENST00000433762 NPPCP23582 126 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 DEFA6Q01524 100 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 HNF4GQ14541 408 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 TPRX1Q8N7U7 411 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 OR2Z1Q8NG97 314 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 Q8TCH9 128 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 GATAD1Q8WUU5 269 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 ASCL3Q9NQ33 180 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 CALYQ9NYX4 217 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 TANC2Q9HCD6 1990 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 MUC6Q6W4X9 2439 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 IGLV3-9A0A075B6K5 115 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 DEFB108AA8MXU0 73 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 MKRN2OSH3BPM6 223 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 HMGB3O15347 200 aaKnown RBP11.3□□□□□ -0.6
COL6A3-207ENST00000433762 MT-CO2P00403 227 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 GNB1P62873 340 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 EDDM3AQ14507 147 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 C4orf17Q53FE4 359 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 MEGF10Q96KG7 1140 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 PCGF1Q9BSM1 259 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 TMEM140Q9NV12 185 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 DUSP13Q9UII6 198 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 TCF19Q9Y242 345 aa11.3□□□□□ -0.6
COL6A3-207ENST00000433762 NKX2-8O15522 239 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 AMBPP02760 352 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 CCKARP32238 428 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 RAB31Q13636 194 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 C11orf52Q96A22 123 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 SDSLQ96GA7 329 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 MGST2Q99735 147 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 FAM234AQ9H0X4 552 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 TMEM14BQ9NUH8 114 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 PXMP4Q9Y6I8 212 aa11.29□□□□□ -0.6
COL6A3-207ENST00000433762 A0A1W2PPQ1 181 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 XKRY2A2RUG3 117 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 RPL29P47914 159 aaKnown RBP11.28□□□□□ -0.6
COL6A3-207ENST00000433762 DCTN5Q9BTE1 182 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 ZNF257Q9Y2Q1 563 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 TET2Q6N021 2002 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-207ENST00000433762 AREGP15514 252 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 KLF3P57682 345 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-207ENST00000433762 HSPE1P61604 102 aaKnown RBP11.28□□□□□ -0.6
COL6A3-207ENST00000433762 RHOBP62745 196 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 LINC00469Q8N7U9 141 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 OPN3Q9H1Y3 402 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-207ENST00000433762 MS4A5Q9H3V2 200 aa11.28□□□□□ -0.6
COL6A3-207ENST00000433762 INTS1Q8N201 2190 aaKnown RBP11.28□□□□□ -0.6
COL6A3-207ENST00000433762 KBTBD11-OT1A0A1B0GTJ5 212 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 RRHO14718 337 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 TM4SF5O14894 197 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 RPL15P61313 204 aaKnown RBP11.27□□□□□ -0.6
COL6A3-207ENST00000433762 GAMTQ14353 236 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 LBHQ53QV2 105 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-207ENST00000433762 TEPPQ6URK8 271 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 DEFB124Q8NES8 71 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 TMEM18Q96B42 140 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 ELOVL1Q9BW60 279 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 SLC25A10Q9UBX3 287 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-207ENST00000433762 FZR1Q9UM11 496 aa11.27□□□□□ -0.6
COL6A3-207ENST00000433762 HEATR1Q9H583 2144 aaKnown RBP11.27□□□□□ -0.61
COL6A3-207ENST00000433762 TRAV38-1A0A0B4J264 116 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 C9JCJ5 164 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 CRYAAP02489 173 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 TFF1P04155 84 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 IL6RP08887 468 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-207ENST00000433762 ARL14EPLP0DKL9 152 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 NPY1RP25929 384 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 EDDM3BP56851 147 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 C17orf58Q2M2W7 97 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 SPINK9Q5DT21 86 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 PDZD11Q5EBL8 140 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 REC114Q7Z4M0 266 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 NECAP1Q8NC96 275 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 SLC24A4Q8NFF2 622 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 NOL4LQ96MY1 436 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-207ENST00000433762 OR2V2Q96R30 315 aa11.27□□□□□ -0.61
COL6A3-207ENST00000433762 MDFIC2A0A1B0GVS7 189 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 ATP5G3P48201 142 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 ZNF134P52741 427 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 RTP5Q14D33 572 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 CST9LP1Q5W188 147 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 CDPF1Q6NVV7 123 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 IGFL3Q6UXB1 125 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 ZNF439Q8NDP4 499 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 SFRP2Q96HF1 295 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 PRNDQ9UKY0 176 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 NDUFB4O95168 129 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 IL3RAP26951 378 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 DDTP30046 118 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 CNN1P51911 297 aaKnown RBP11.26□□□□□ -0.61
COL6A3-207ENST00000433762 LINC00205P59089 165 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 RPL39P5Q59GN2 51 aa11.26□□□□□ -0.61
COL6A3-207ENST00000433762 C9orf152Q5JTZ5 239 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms