RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ELOVL1Q9BW60 279 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 MAP1BP46821 2468 aaKnown RBP11.84□□□□□ -0.51
LIG1-202ENST00000427526 FAM90A9PA6NNJ1 464 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 HRASP01112 189 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 GYPAP02724 150 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 CDC34P49427 236 aaPredicted RBP11.84□□□□□ -0.51
LIG1-202ENST00000427526 GAMTQ14353 236 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 LRRC29Q8WV35 223 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 PROCRQ9UNN8 238 aa11.84□□□□□ -0.51
LIG1-202ENST00000427526 INTS1Q8N201 2190 aaKnown RBP11.83□□□□□ -0.52
LIG1-202ENST00000427526 APC2O95996 2303 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 CUL9Q8IWT3 2517 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 IGHV2OR16-5A0A0B4J2B6 119 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 CR1LQ2VPA4 569 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 MORN2Q502X0 79 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 COA6Q5JTJ3 125 aaKnown RBP11.83□□□□□ -0.52
LIG1-202ENST00000427526 Q8TCH9 128 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 OR5B12Q96R08 314 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 ZNF71Q9NQZ8 489 aaPredicted RBP11.83□□□□□ -0.52
LIG1-202ENST00000427526 GAB2Q9UQC2 676 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 IGKV1D-17A0A075B6S4 117 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 IGHV1-18A0A0C4DH31 117 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 C11orf94C9JXX5 98 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 HPRT1P00492 218 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 GCH1P30793 250 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 GCSAMLQ5JQS6 135 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 RAB1CQ92928 201 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 PCGF1Q9BSM1 259 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 FAM215AQ9Y5M1 114 aa11.83□□□□□ -0.52
LIG1-202ENST00000427526 MBD3L4A6NDZ8 208 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 MBD3L3A6NE82 208 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 MBD3L5A6NJ08 208 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 PPP5D1E7EU14 171 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 TSTD3H0UI37 97 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 FCGR3BO75015 233 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 SNRPCP09234 159 aaKnown RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 PAX1P15863 534 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 EGR1P18146 543 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 GPR12P47775 334 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 EDDM3AQ14507 147 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 PDLIM3Q53GG5 364 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 MBD3L2Q8NHZ7 208 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 NBEAQ8NFP9 2946 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 ANKRD11Q6UB99 2663 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 GGCTO75223 188 aaKnown RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 FAM3BP58499 235 aaPredicted RBP11.82□□□□□ -0.52
LIG1-202ENST00000427526 LTC4SQ16873 150 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 ATMQ13315 3056 aa11.82□□□□□ -0.52
LIG1-202ENST00000427526 PRSS46E5RG02 174 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 YPEL1O60688 119 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 OR52E5Q8NH55 327 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 RNASEH2CQ8TDP1 164 aaKnown RBP11.81□□□□□ -0.52
LIG1-202ENST00000427526 FAM216AQ8WUB2 273 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 YPEL2Q96QA6 119 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 JPT1Q9UK76 154 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 TRAV38-1A0A0B4J264 116 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 SRRM5B3KS81 715 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 TYMSP04818 313 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 VDAC2P45880 294 aaPredicted RBP11.81□□□□□ -0.52
LIG1-202ENST00000427526 ZNF134P52741 427 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 TMPRSS3P57727 454 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 LOXL3P58215 753 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 OR1P1Q8NH06 330 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 PLPPR2Q96GM1 343 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 PDE6DO43924 150 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 SOX15O60248 233 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 SRP14P37108 136 aaKnown RBP11.81□□□□□ -0.52
LIG1-202ENST00000427526 PDLIM4P50479 330 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 GNB1P62873 340 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 TREML4Q6UXN2 200 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 C1orf174Q8IYL3 243 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 TMEM170AQ8WVE7 144 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 ABHD17AQ96GS6 310 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 SCNM1Q9BWG6 230 aa11.81□□□□□ -0.52
LIG1-202ENST00000427526 A0A1W2PPQ1 181 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 RRHO14718 337 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 TMPRSS2O15393 492 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 RBFOX2O43251 390 aaKnown RBP eCLIP11.8□□□□□ -0.522e-6■□□□□ 9.8
LIG1-202ENST00000427526 MPDU1O75352 247 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 AMBPP02760 352 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 ZNF25P17030 456 aaPredicted RBP11.8□□□□□ -0.52
LIG1-202ENST00000427526 CFHR2P36980 270 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 MSMPQ1L6U9 139 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 CLEC12BQ2HXU8 276 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 BHLHA15Q7RTS1 189 aaPredicted RBP11.8□□□□□ -0.52
LIG1-202ENST00000427526 LINC01551Q86U37 167 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 OR2Z1Q8NG97 314 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 OR2T10Q8NGZ9 312 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 GNG12Q9UBI6 72 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 RP1L1Q8IWN7 2480 aaPredicted RBP11.8□□□□□ -0.52
LIG1-202ENST00000427526 OPRK1P41145 380 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 EDDM3BP56851 147 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 RELBQ01201 579 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 MZT1Q08AG7 82 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 ACTL10Q5JWF8 245 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 ZNF474Q6S9Z5 364 aaPredicted RBP11.8□□□□□ -0.52
LIG1-202ENST00000427526 VKORC1L1Q8N0U8 176 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 OR5R1Q8NH85 324 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 GOLT1BQ9Y3E0 138 aa11.8□□□□□ -0.52
LIG1-202ENST00000427526 F2RL2O00254 374 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms