RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.09□□□□□ -1.11
CD44-207ENST00000425428 ZFP57Q9NU63 452 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 A0A1B0GU03 582 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 A6NDX4 124 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 CLDN34H7C241 214 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 WRBO00258 174 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 SAA1P0DJI8 122 aaPredicted RBP8.08□□□□□ -1.12
CD44-207ENST00000425428 GNB1P62873 340 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 RPL8P62917 257 aaKnown RBP8.08□□□□□ -1.12
CD44-207ENST00000425428 SMCO1Q147U7 214 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 PSG5Q15238 335 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 POU2AF1Q16633 256 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 C5orf64Q2M2E5 130 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 ANKRD55Q3KP44 614 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 OR4A47Q6IF82 309 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 SEC22AQ96IW7 307 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 PRSS22Q9GZN4 317 aa8.08□□□□□ -1.12
CD44-207ENST00000425428 SOX21Q9Y651 276 aaPredicted RBP8.08□□□□□ -1.12
CD44-207ENST00000425428 C7orf66A4D0T2 115 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 DNAJC9-AS1A6NH13 148 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 GOSR2O14653 212 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 MED6O75586 246 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 NDUFA3O95167 84 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 IFNA17P01571 189 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 FGF2P09038 288 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 SLC25A6P12236 298 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 F2RL1P55085 397 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 HILS1P60008 231 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 TMEM267Q0VDI3 215 aaPredicted RBP8.07□□□□□ -1.12
CD44-207ENST00000425428 TNXAQ16473 311 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 LYZL2Q7Z4W2 148 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 VKORC1L1Q8N0U8 176 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 TMEM167AQ8TBQ9 72 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 ZNF48Q96MX3 618 aaPredicted RBP8.07□□□□□ -1.12
CD44-207ENST00000425428 FBXL15Q9H469 300 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 MGAT4CQ9UBM8 478 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 SIGLEC9Q9Y336 463 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 CYB5BO43169 146 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 IAH1Q2TAA2 248 aaPredicted RBP8.07□□□□□ -1.12
CD44-207ENST00000425428 GGNBP1Q5YKI7 109 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 FOXRED2Q8IWF2 684 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 Q8N6K4 173 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 ASB13Q8WXK3 278 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 GON7Q9BXV9 100 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 PRR13Q9NZ81 148 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 GSKIPQ9P0R6 139 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 CACNG5Q9UF02 275 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 OR51B2Q9Y5P1 312 aa8.07□□□□□ -1.12
CD44-207ENST00000425428 UPK2O00526 184 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 GPR137BO60478 399 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 LY86O95711 162 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 RLN2P04090 185 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 PET100P0DJ07 73 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 HLA-GP17693 338 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 PVALBP20472 110 aaPredicted RBP8.06□□□□□ -1.12
CD44-207ENST00000425428 BRWD1-AS2P59051 145 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 RRAS2P62070 204 aaPredicted RBP8.06□□□□□ -1.12
CD44-207ENST00000425428 HSD17B13Q7Z5P4 300 aaPredicted RBP8.06□□□□□ -1.12
CD44-207ENST00000425428 PUSL1Q8N0Z8 303 aaKnown RBP8.06□□□□□ -1.12
CD44-207ENST00000425428 C5orf56Q8N8D9 126 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 OR1L8Q8NGR8 309 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 OR5B3Q8NH48 314 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 PIFOQ8TCI5 191 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 DUX5Q96PT3 197 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 HINT2Q9BX68 163 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 CHIAQ9BZP6 476 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 COA4Q9NYJ1 87 aa8.06□□□□□ -1.12
CD44-207ENST00000425428 MAST4O15021 2626 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 A0A1W2PN81 502 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 C15orf61A6NNL5 157 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 SRRM4A7MD48 611 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 CA2P00918 260 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 HLA-DRB1P01911 266 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 RNASE1P07998 156 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 CNTFRP26992 372 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 CHRNA7P36544 502 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 RPL27AP46776 148 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 RPP30P78346 268 aaKnown RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 FXYD3Q14802 87 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 PRSS8Q16651 343 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 ZNF562Q6V9R5 426 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 Q6ZNX1 250 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 SLC35E3Q7Z769 313 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 Q8N9W7 124 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 OR2T6Q8NHC8 308 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 LHFPL5Q8TAF8 219 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 GPR146Q96CH1 333 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 C2orf50Q96LR7 162 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 HIPK2Q9H2X6 1198 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 ZNF430Q9H8G1 570 aaPredicted RBP8.05□□□□□ -1.12
CD44-207ENST00000425428 PLEKHA3Q9HB20 300 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 ZNF257Q9Y2Q1 563 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 MTORP42345 2549 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 DBX1A6NMT0 343 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 CEBPZOSA8MTT3 80 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 FAM90A26D6RGX4 464 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 ADAP1O75689 374 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 SCGB1D2O95969 90 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 IGKV1-39P01597 117 aa8.05□□□□□ -1.12
CD44-207ENST00000425428 IGKV1-5P01602 117 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms