RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LEPP41159 167 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 RBKSQ9H477 322 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 SOX21Q9Y651 276 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-204ENST00000423058 FRMPD3Q5JV73 1810 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 ADAMTSL1Q8N6G6 1762 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 BGLAPP02818 100 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 MMP16P51512 607 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM170BQ5T4T1 132 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 LYZL2Q7Z4W2 148 aa5.9□□□□□ -1.46
SCN1A-204ENST00000423058 TRBV20OR9-2A0A075B6H5 130 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 HMX2A2RU54 273 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 C9JCJ5 164 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 TSPAN2O60636 221 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 HLA-DRB1P01911 266 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 RPS11P62280 158 aaKnown RBP eCLIP5.9□□□□□ -1.47
SCN1A-204ENST00000423058 OR9G4Q8NGQ1 327 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 C8orf88P0DMB2 117 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 RND2P52198 227 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 PSG4Q00888 419 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 PNKDQ8N490 385 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM167AQ8TBQ9 72 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 SRSF12Q8WXF0 261 aaKnown RBP5.9□□□□□ -1.47
SCN1A-204ENST00000423058 PRO1933Q9H354 126 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 C7orf71A4D174 169 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 C19orf67A6NJJ6 358 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 EREGO14944 169 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 HYAL3O43820 417 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-204ENST00000423058 ATP5LO75964 103 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 SNRPEP62304 92 aaKnown RBP5.9□□□□□ -1.47
SCN1A-204ENST00000423058 C7orf69Q9H7B7 122 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 SPANXA1Q9NS26 97 aa5.9□□□□□ -1.47
SCN1A-204ENST00000423058 BCL2P10415 239 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ERVK11-1P61568 191 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 CSRP2Q16527 193 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 C1QL3Q5VWW1 255 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 FAM206AQ9NX38 181 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ALPK2Q86TB3 2170 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 A0A1W2PRX2 142 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 TGFAP01135 160 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 TYMSP04818 313 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 DMKNQ6E0U4 476 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 SPSB4Q96A44 273 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF501Q96CX3 271 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 SCARF2Q96GP6 870 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 COX5BP10606 129 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 MUC1P15941 1255 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 HSPE1P61604 102 aaKnown RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 SPATA45Q537H7 98 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 RIPPLY2Q5TAB7 128 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 RGP1Q92546 391 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 RHOVQ96L33 236 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 C1QTNF9BB2RNN3 333 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 LCN2P80188 198 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF345Q14585 488 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ACSF3Q4G176 576 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 C1QTNF12Q5T7M4 302 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 C8orf46Q8TAG6 207 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 KLF14Q8TD94 323 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 NEUROG1Q92886 237 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 KLK15Q9H2R5 256 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF703Q9H7S9 590 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 MRPL16Q9NX20 251 aaKnown RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 TET1Q8NFU7 2136 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 COL5A3P25940 1745 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 J3QW42 95 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 UPK3AO75631 287 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 SOD3P08294 240 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 EFNB2P52799 333 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM86BQ8N661 226 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 OR13A1Q8NGR1 328 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ARL14EPLP0DKL9 152 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 GLI3P10071 1580 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF25P17030 456 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-204ENST00000423058 TOMM7Q9P0U1 55 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 DPM3Q9P2X0 92 aa5.89□□□□□ -1.47
SCN1A-204ENST00000423058 MARCH11A6NNE9 402 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 FOXI3A8MTJ6 420 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 EIF3GO75821 320 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 SMIM13P0DJ93 91 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 GLRXP35754 106 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 ARPC1AQ92747 370 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 FOXC2Q99958 501 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 LINC00470Q9BZP3 86 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 DUSP14O95147 198 aaKnown RBP5.88□□□□□ -1.47
SCN1A-204ENST00000423058 REG1AP05451 166 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 IFI6P09912 130 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 HOXA5P20719 270 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 NPBWR2P48146 333 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 VAX1Q5SQQ9 334 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 Q6ZT83 130 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 OR2K2Q8NGT1 345 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 MBD3L1Q8WWY6 194 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 SCN10AQ9Y5Y9 1956 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 LCTP09848 1927 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 CDC42EP2O14613 210 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 HKR1P10072 659 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 UBE2V2Q15819 145 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 PPP1R27Q86WC6 154 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 TMEM54Q969K7 222 aa5.88□□□□□ -1.47
SCN1A-204ENST00000423058 ZNF488Q96MN9 340 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms