RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 C8orf17Q9NRJ1 99 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 ASF1BQ9NVP2 202 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TNFSF18Q9UNG2 199 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 SLC22A14Q9Y267 594 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 SIGLEC7Q9Y286 467 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 RFNGQ9Y644 331 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 NHSL1Q5SYE7 1610 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 PKD1L3Q7Z443 1732 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 TRPM3Q9HCF6 1732 aaPredicted RBP2.81□□□□□ -1.96
VPS54-204ENST00000416400 PCM1Q15154 2024 aa2.81□□□□□ -1.96
VPS54-204ENST00000416400 CCDC88AQ3V6T2 1871 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 IGKV2-28A0A075B6P5 120 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 IGHV3-72A0A0B4J1Y9 119 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 TRAV8-4A0A0B4J246 113 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 A0A1B0GW64 132 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 MGAT4DA6NG13 374 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 E7EQ34 232 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 F5H5T6 163 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 G3V3Q6 166 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 RPL36A-HNRNPH2H7BZ11 118 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 K7EP13 123 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 M0R036 132 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 PSPHP1O15172 72 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 ALOX12BO75342 701 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CPSF4O95639 269 aaKnown RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 IGKV2D-28P01615 120 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 P01737 135 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 PRB2P02812 416 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 CD74P04233 296 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 HLA-DQB2P05538 268 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CD14P08571 375 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CST2P09228 141 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SFTA3P0C7M3 94 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SLC35G6P0C7Q6 338 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 ZNF7P17097 686 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 CCNOP22674 350 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CXCR1P25024 350 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 PSMB6P28072 239 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 GNRHRP30968 328 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 MPIP34949 423 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SNCAP37840 140 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 STC1P52823 247 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 ACTBP60709 375 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 RPL31P62899 125 aaKnown RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 FKBP1AP62942 108 aaKnown RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 ACTG1P63261 375 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 FAM3AP98173 230 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CDK6Q00534 326 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SURF2Q15527 256 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 OR4D1Q15615 310 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 VAMP3Q15836 100 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 GUK1Q16774 197 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 C5orf47Q569G3 176 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 KHDRBS2Q5VWX1 349 aaKnown RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 SYPL2Q5VXT5 272 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 GUSBP11Q6P575 273 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 ZNF322Q6U7Q0 402 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 SCIMPQ6UWF3 145 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 Q6ZSR6 202 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 BHLHA15Q7RTS1 189 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 SLC36A1Q7Z2H8 476 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 COMMD6Q7Z4G1 85 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 OR5M1Q8NGP8 315 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 OR9A2Q8NGT5 310 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 TNFRSF14Q92956 283 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SMIM12Q96EX1 92 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 IMP4Q96G21 291 aaKnown RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 ACY3Q96HD9 319 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SMIM8Q96KF7 97 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 PHB2Q99623 299 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CDX2Q99626 313 aaPredicted RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 TMEM208Q9BTX3 173 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 SLC35B3Q9H1N7 401 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 OR51B6Q9H340 312 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 RERGLQ9H628 205 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 TMEM242Q9NWH2 141 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 DOK5Q9P104 306 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 CACFD1Q9UGQ2 172 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 FARSAQ9Y285 508 aaKnown RBP2.8□□□□□ -1.96
VPS54-204ENST00000416400 AKAP11Q9UKA4 1901 aa2.8□□□□□ -1.96
VPS54-204ENST00000416400 LAMB1P07942 1786 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 MAST2Q6P0Q8 1798 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 BCORQ6W2J9 1755 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DLEC1Q9Y238 1755 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ADAMTSL3P82987 1691 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 TOPAZ1Q8N9V7 1692 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 TRBV6-7A0A0A0MS04 114 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 A0A0A6YYH2 397 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 BORCS7-ASMTA0A0B4J1R7 106 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 IGHV2OR16-5A0A0B4J2B6 119 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 DAPL1A0PJW8 107 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 A6NJ64 397 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 C9J4A7 227 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 M0R1X1 148 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 ADAP1O75689 374 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 CST4P01036 141 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 IGF2P01344 180 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 IGLV3-25P01717 112 aa2.79□□□□□ -1.96
VPS54-204ENST00000416400 PPBPP02775 128 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms