RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FNDC4Q9H6D8 234 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-206ENST00000409809 J3QW42 95 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 COX11Q9Y6N1 276 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 ZNF708P17019 499 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 SPINK9Q5DT21 86 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 TPTE2P1Q5T6R2 138 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 EBLN2Q6P2I7 272 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 HS3ST3B1Q9Y662 390 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 CREBBPQ92793 2442 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 NEU1Q99519 415 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 CXCL16Q9H2A7 254 aa11.13□□□□□ -0.63
COL6A3-206ENST00000409809 TRBV20OR9-2A0A075B6H5 130 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 LIMS1P48059 325 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 TMEM95Q3KNT9 176 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 KLF12Q9Y4X4 402 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 MRPS18BQ9Y676 258 aaKnown RBP11.12□□□□□ -0.63
COL6A3-206ENST00000409809 PEX11BO96011 259 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 CD5P06127 495 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 SELENOHQ8IZQ5 122 aaKnown RBP11.12□□□□□ -0.63
COL6A3-206ENST00000409809 DRAM1Q8N682 238 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 ZNF562Q6V9R5 426 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 RFLNAQ6ZTI6 216 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 WDR54Q9H977 334 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 PAX2Q02962 417 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 COL24A1Q17RW2 1714 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 SP9P0CG40 484 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 CACNG8Q8WXS5 425 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 RTN4RQ9BZR6 473 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 BEX4Q9NWD9 120 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-206ENST00000409809 LHX8Q68G74 356 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 LINC00696Q6ZRV3 163 aa11.12□□□□□ -0.63
COL6A3-206ENST00000409809 GGTLC3B5MD39 225 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 SPINK8P0C7L1 97 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 FAM27BQ5VT28 67 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 PRSS27Q9BQR3 290 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 HEXA-AS1Q9H8Q6 139 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 MRPL27Q9P0M9 148 aaKnown RBP11.11□□□□□ -0.63
COL6A3-206ENST00000409809 APOHP02749 345 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-206ENST00000409809 INAFM2P0DMQ5 153 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 PTGDSP41222 190 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 TMEM187Q14656 261 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 TMEM186Q96B77 213 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 INSIG2Q9Y5U4 225 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 FCGR2BP31994 310 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-206ENST00000409809 ROS1P08922 2347 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 NKX2-8O15522 239 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 SLC25A38Q96DW6 304 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 MMP23AO75900 390 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 DEFB108BQ8NET1 73 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 SRSF12Q8WXF0 261 aaKnown RBP11.11□□□□□ -0.63
COL6A3-206ENST00000409809 ATP6V0BQ99437 205 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 F8W1H4 67 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 TM4SF20Q53R12 229 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 MBNL2Q5VZF2 373 aaKnown RBP11.11□□□□□ -0.63
COL6A3-206ENST00000409809 TNFRSF19Q9NS68 423 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 CCL27Q9Y4X3 112 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.11□□□□□ -0.63
COL6A3-206ENST00000409809 CACNA1HO95180 2353 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 UBR3Q6ZT12 1888 aa11.11□□□□□ -0.63
COL6A3-206ENST00000409809 CD5LO43866 347 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 EFNB2P52799 333 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 SPATA46Q5T0L3 261 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 LINC01465Q8N7H1 131 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 PLCE1Q9P212 2302 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 PKDREJQ9NTG1 2253 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 CNTFRP26992 372 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 SCGB3A1Q96QR1 104 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 NHP2Q9NX24 153 aaKnown RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 A0A1B0GTI1 187 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 OTX1P32242 354 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 TMEM170BQ5T4T1 132 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 EML6Q6ZMW3 1958 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 FAM90A9PA6NNJ1 464 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 NDUFA2O43678 99 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 HSPE1P61604 102 aaKnown RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 PIGYQ3MUY2 71 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 PGPEP1Q9NXJ5 209 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 C1QAP02745 245 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 PCNX1Q96RV3 2341 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 AGMATQ9BSE5 352 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 WNT5AP41221 380 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 SOX8P57073 446 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 COL9A2Q14055 689 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 INO80CQ6PI98 192 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 GLRX5Q86SX6 157 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 HMGA1P17096 107 aaKnown RBP11.1□□□□□ -0.63
COL6A3-206ENST00000409809 SPRED2Q7Z698 418 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 MDP1Q86V88 176 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 C20orf144Q9BQM9 153 aa11.1□□□□□ -0.63
COL6A3-206ENST00000409809 HOXB3P14651 431 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-206ENST00000409809 PAX1P15863 534 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 MDKP21741 143 aaPredicted RBP11.09□□□□□ -0.63
COL6A3-206ENST00000409809 CX3CL1P78423 397 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 CCL20P78556 96 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 DUSP2Q05923 314 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 COLCA2A8K830 154 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 HIGD1CA8MV81 97 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 MMDQ15546 238 aa11.09□□□□□ -0.63
COL6A3-206ENST00000409809 RFESDQ8TAC1 157 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms