RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 RITA1Q96K30 269 aa11.35□□□□□ -0.59
GPNMB-203ENST00000409458 BET1LQ9NYM9 111 aa11.35□□□□□ -0.59
GPNMB-203ENST00000409458 FOXA2Q9Y261 457 aaPredicted RBP11.35□□□□□ -0.59
GPNMB-203ENST00000409458 INSIG2Q9Y5U4 225 aa11.35□□□□□ -0.59
GPNMB-203ENST00000409458 DOPEY2Q9Y3R5 2298 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 CEBPZOSA8MTT3 80 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 LEUTXA8MZ59 168 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 UPK2O00526 184 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 CST7O76096 145 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 IFNA17P01571 189 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 IGLV2-23P01705 113 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 MYOD1P15172 320 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 TAS2R30P59541 319 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 RPS16P62249 146 aaKnown RBP11.34□□□□□ -0.59
GPNMB-203ENST00000409458 BAXQ07812 192 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 PDLIM3Q53GG5 364 aaPredicted RBP11.34□□□□□ -0.59
GPNMB-203ENST00000409458 ZNF429Q86V71 674 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 OR8H3Q8N146 312 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 OR52E5Q8NH55 327 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 SCARB1Q8WTV0 552 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 PCNPQ8WW12 178 aaKnown RBP11.34□□□□□ -0.59
GPNMB-203ENST00000409458 MS4A7Q9GZW8 240 aaPredicted RBP11.34□□□□□ -0.59
GPNMB-203ENST00000409458 TMEM14BQ9NUH8 114 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 BEX4Q9NWD9 120 aaPredicted RBP11.34□□□□□ -0.59
GPNMB-203ENST00000409458 DPM3Q9P2X0 92 aa11.34□□□□□ -0.59
GPNMB-203ENST00000409458 KBTBD11O94819 623 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 SLC25A16P16260 332 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 PAX6P26367 422 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 DYNLT3P51808 116 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 SPCS3P61009 180 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 DEFB113Q30KQ7 82 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 SPANXN5Q5MJ07 72 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 TMEM217Q8N7C4 229 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 OR4C12Q96R67 309 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 AIFM2Q9BRQ8 373 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 NUP50Q9UKX7 468 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 TCF19Q9Y242 345 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 HILPDAQ9Y5L2 63 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 RPS10-NUDT3A0A1W2PQS6 291 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 TIMM23O14925 209 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 METTL15P1P0C7V9 234 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 USF1P22415 310 aaPredicted RBP11.33□□□□□ -0.6
GPNMB-203ENST00000409458 SULT1A1P50225 295 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 CLINT1Q14677 625 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 STX12Q86Y82 276 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 BAP18Q8IXM2 172 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 OR5C1Q8NGR4 320 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 PHYHIPLQ96FC7 376 aa11.33□□□□□ -0.6
GPNMB-203ENST00000409458 MED13LQ71F56 2210 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 A0A096LNT2 108 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 CEACAM3P40198 252 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 PAX8Q06710 450 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 ARL16Q0P5N6 197 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 FAM74A1Q5RGS3 127 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 TMEM14EPQ6UXP3 125 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 HAPLN4Q86UW8 402 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 DYNAPQ8N1N2 210 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 C17orf50Q8WW18 174 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 CIB3Q96Q77 187 aaPredicted RBP11.32□□□□□ -0.6
GPNMB-203ENST00000409458 TPSG1Q9NRR2 321 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 PRNDQ9UKY0 176 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 OR51B2Q9Y5P1 312 aa11.32□□□□□ -0.6
GPNMB-203ENST00000409458 SLC25A17O43808 307 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 JTBO76095 146 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 CNTFRP26992 372 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 VDAC2P45880 294 aaPredicted RBP11.31□□□□□ -0.6
GPNMB-203ENST00000409458 HOXA1P49639 335 aaPredicted RBP11.31□□□□□ -0.6
GPNMB-203ENST00000409458 UBE2E1P51965 193 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 MINOS1Q5TGZ0 78 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 SLC7A5P1Q8MH63 180 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 UBAC2Q8NBM4 344 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 OR4A5Q8NH83 315 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 TMEM167AQ8TBQ9 72 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 CFHR4Q92496 578 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 MINOS1-NBL1R4GNA1 71 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 ANKRD17O75179 2603 aaKnown RBP11.31□□□□□ -0.6
GPNMB-203ENST00000409458 WNK2Q9Y3S1 2297 aa11.31□□□□□ -0.6
GPNMB-203ENST00000409458 VENTXO95231 258 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 OPN1MWP04001 364 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 MSMBP08118 114 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 OPN1MW2P0DN77 364 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 OPN1MW3P0DN78 364 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 HSPE1P61604 102 aaKnown RBP11.3□□□□□ -0.6
GPNMB-203ENST00000409458 SSX2Q16385 188 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 VMA21Q3ZAQ7 101 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 LRRC75A-AS1Q8N1F1 130 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 STPG2Q8N412 459 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 OR1S2Q8NGQ3 325 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 VSTM2AQ8TAG5 236 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 TMED6Q8WW62 240 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 CACFD1Q9UGQ2 172 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 ZNF257Q9Y2Q1 563 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 STRAPQ9Y3F4 350 aaKnown RBP11.3□□□□□ -0.6
GPNMB-203ENST00000409458 BORCS7-ASMTA0A0B4J1R7 106 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 FGF2P09038 288 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 LGALS7P47929 136 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 LGALS4P56470 323 aa11.3□□□□□ -0.6
GPNMB-203ENST00000409458 EIF5AP63241 154 aaKnown RBP11.3□□□□□ -0.6
GPNMB-203ENST00000409458 HABP2Q14520 560 aaPredicted RBP11.3□□□□□ -0.6
GPNMB-203ENST00000409458 MRGPRG-AS1Q2M3A8 158 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms