RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GSG1LQ6UXU4 331 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 PUSL1Q8N0Z8 303 aaKnown RBP14.42□□□□□ -0.1
SDC1-203ENST00000403076 OR4A16Q8NH70 328 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 CLCC1Q96S66 551 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 RANBP3Q9H6Z4 567 aaPredicted RBP14.42□□□□□ -0.1
SDC1-203ENST00000403076 VPREB3Q9UKI3 123 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 MOB4Q9Y3A3 225 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 POMT1Q9Y6A1 747 aa14.42□□□□□ -0.1
SDC1-203ENST00000403076 SIX6O95475 246 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 TUSC1Q2TAM9 212 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 DUX5Q96PT3 197 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 SPIN2AQ99865 258 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 RASL11BQ9BPW5 248 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 SPIN2BQ9BPZ2 258 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 PDCD10Q9BUL8 212 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 PLSCR3Q9NRY6 295 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 BET1LQ9NYM9 111 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 NSG2Q9Y328 171 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 SIGLEC9Q9Y336 463 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 TRAV3A0A0B4J244 114 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 UPK2O00526 184 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 KBTBD11O94819 623 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 NDUFA3O95167 84 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 OR9G9P0C7N8 305 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 SULT1A3P0DMM9 295 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 SULT1A4P0DMN0 295 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 C5orf64Q2M2E5 130 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 NMSQ5H8A3 153 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 CADM3Q8N126 398 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 TMEM86BQ8N661 226 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 OR4A5Q8NH83 315 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 OR1S1Q8NH92 325 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 TPSG1Q9NRR2 321 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 GSKIPQ9P0R6 139 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 CACNG5Q9UF02 275 aa14.41□□□□□ -0.1
SDC1-203ENST00000403076 A0A1B0GU03 582 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 P0C879 139 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 SMCO1Q147U7 214 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 IAH1Q2TAA2 248 aaPredicted RBP14.4□□□□□ -0.1
SDC1-203ENST00000403076 C16orf82Q7Z2V1 217 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 PPP1R27Q86WC6 154 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 Q8N9W7 124 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 OR5M8Q8NGP6 311 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 TMEM167AQ8TBQ9 72 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 OR10C1Q96KK4 312 aa14.4□□□□□ -0.1
SDC1-203ENST00000403076 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.4□□□□□ -0.1
SDC1-203ENST00000403076 DNAJC9-AS1A6NH13 148 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 MPTX1A8MV57 137 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 M0QZK8 103 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 ACTL6BO94805 426 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 CRYGBP07316 175 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 HLA-GP17693 338 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 OR2B8PP59922 312 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 RPL8P62917 257 aaKnown RBP14.39□□□□□ -0.11
SDC1-203ENST00000403076 RELBQ01201 579 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 Q6ZRM9 215 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 MMD2Q8IY49 270 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 CHIAQ9BZP6 476 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 ZNF430Q9H8G1 570 aaPredicted RBP14.39□□□□□ -0.11
SDC1-203ENST00000403076 PRNDQ9UKY0 176 aa14.39□□□□□ -0.11
SDC1-203ENST00000403076 HMX3A6NHT5 357 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 FGF16O43320 207 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 CHST1O43916 411 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 CXCL3P19876 107 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 GNB1P62873 340 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 PJVKQ0ZLH3 352 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 PRSS8Q16651 343 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 C9orf152Q5JTZ5 239 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 FAM71E2Q8N5Q1 922 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 OR11H7Q8NGC8 314 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 C2orf50Q96LR7 162 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 JMJD8Q96S16 334 aa14.38□□□□□ -0.11
SDC1-203ENST00000403076 FCN1O00602 326 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 CNIH1O95406 144 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 IL6RP08887 468 aaPredicted RBP14.37□□□□□ -0.11
SDC1-203ENST00000403076 SLC25A6P12236 298 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 BCAP31P51572 246 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 TNXAQ16473 311 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 C5orf56Q8N8D9 126 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 ZBTB8BQ8NAP8 495 aaPredicted RBP14.37□□□□□ -0.11
SDC1-203ENST00000403076 COMMD5Q9GZQ3 224 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 FKBP11Q9NYL4 201 aa14.37□□□□□ -0.11
SDC1-203ENST00000403076 FN1P02751 2386 aaKnown RBP14.37□□□□□ -0.11
SDC1-203ENST00000403076 C15orf61A6NNL5 157 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 NXPH3O95157 252 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 CA2P00918 260 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 TRAPPC2P0DI81 140 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 TRAPPC2BP0DI82 140 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 CHAC2Q8WUX2 184 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 QTRT1Q9BXR0 403 aaKnown RBP14.36□□□□□ -0.11
SDC1-203ENST00000403076 COA4Q9NYJ1 87 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 OR51B2Q9Y5P1 312 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 SH2D7A6NKC9 451 aaPredicted RBP14.36□□□□□ -0.11
SDC1-203ENST00000403076 GPR137BO60478 399 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 SCGB1D2O95969 90 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 IFNA17P01571 189 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 OPN1MWP04001 364 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 OPN1MW2P0DN77 364 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 OPN1MW3P0DN78 364 aa14.36□□□□□ -0.11
SDC1-203ENST00000403076 MAS1LP35410 378 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms