RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KCNE5Q9UJ90 142 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 LOC102723996A0A087X1L8 192 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 J3QW42 95 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 SPNP16150 400 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 FAM219BQ5XKK7 198 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 OR4D11Q8NGI4 311 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 OR9G4Q8NGQ1 327 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 CFHR5Q9BXR6 569 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 TMEM222Q9H0R3 208 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 C4AP0C0L4 1744 aa6.14□□□□□ -1.43
UPF2-203ENST00000397053 A0A087X0M5 115 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 A0A1B0GX30 115 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 ATP5IP56385 69 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 ZNF324BQ6AW86 544 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 SLC25A47Q6Q0C1 308 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 C10orf111Q8N326 155 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 ZPLD1Q8TCW7 415 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 ARPC1AQ92747 370 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 TAF15Q92804 592 aaKnown RBP eCLIP6.13□□□□□ -1.43
UPF2-203ENST00000397053 SCARF2Q96GP6 870 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 SPSB2Q99619 263 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 NABP2Q9BQ15 211 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 C19orf24Q9BVV8 132 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 SLX4Q8IY92 1834 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 GAGE10A6NGK3 116 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 LILRA1O75019 489 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 EIF3GO75821 320 aaKnown RBP eCLIP6.13□□□□□ -1.43
UPF2-203ENST00000397053 CDK2AP2O75956 126 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 CECR9P0C854 216 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 CRYBB3P26998 211 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 FAM3BP58499 235 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 RPS11P62280 158 aaKnown RBP eCLIP6.13□□□□□ -1.43
UPF2-203ENST00000397053 TMEM167AQ8TBQ9 72 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 CHCHD5Q9BSY4 110 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 FOXA2Q9Y261 457 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 PHIPQ8WWQ0 1821 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 AHDC1Q5TGY3 1603 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 FAM90A26D6RGX4 464 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 ZG16O60844 167 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 PGLYRP1O75594 196 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 IGKV1D-16P01601 117 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 MESP2Q0VG99 397 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 LEMD1Q68G75 181 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 VKORC1L1Q8N0U8 176 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 FAM216BQ8N7L0 139 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 OSR1Q8TAX0 266 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 ST6GAL2Q96JF0 529 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 SPG11Q96JI7 2443 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 GGCTO75223 188 aaKnown RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 PI4KAP42356 2102 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 MEF2CQ06413 473 aaPredicted RBP6.13□□□□□ -1.43
UPF2-203ENST00000397053 C12orf54Q6X4T0 127 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 HSPB9Q9BQS6 159 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 SMCHD1A6NHR9 2005 aa6.13□□□□□ -1.43
UPF2-203ENST00000397053 HOXA5P20719 270 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 CRYBA2P53672 197 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 TMEM42Q69YG0 159 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 TRAV8-6A0A0B4J262 113 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 SAP30O75446 220 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 CD8AP01732 235 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 PLP1P60201 277 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 ZNF146Q15072 292 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 TTC32Q5I0X7 151 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 RTN4RL2Q86UN3 420 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 CYB561D1Q8N8Q1 229 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 SPSB4Q96A44 273 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 GPR146Q96CH1 333 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 REPIN1Q9BWE0 567 aaKnown RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 DUSP14O95147 198 aaKnown RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 HLA-DRB1P01911 266 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 HSPB1P04792 205 aaKnown RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 IL6RP08887 468 aaPredicted RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 MDKP21741 143 aaPredicted RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 OTX1P32242 354 aaPredicted RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 CFHR1Q03591 330 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 TNFRSF9Q07011 255 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 VAX1Q5SQQ9 334 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 ABLIM2Q6H8Q1 611 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 WDR82Q6UXN9 313 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 OR11H4Q8NGC9 324 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 SDF2L1Q9HCN8 221 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 CBLN4Q9NTU7 201 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 F11RQ9Y624 299 aaKnown RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 CCDC168Q8NDH2 2452 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 CENPVL1A0A0U1RR11 272 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 TSPAN13O95857 204 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 NBEAP1P0C6P0 100 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 COTL1Q14019 142 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 FAM201AQ5SY85 155 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 MRPL32Q9BYC8 188 aaKnown RBP6.12□□□□□ -1.43
UPF2-203ENST00000397053 WNT10AQ9GZT5 417 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 ZNF688P0C7X2 276 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 LINC00305Q7Z4B0 112 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 SAXO1Q8IYX7 474 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 GPHA2Q96T91 129 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 TMEM160Q9NX00 188 aa6.12□□□□□ -1.43
UPF2-203ENST00000397053 LINC00862A6NCI5 91 aa6.11□□□□□ -1.43
UPF2-203ENST00000397053 C17orf100A8MU93 164 aa6.11□□□□□ -1.43
UPF2-203ENST00000397053 NPBWR2P48146 333 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms