RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCL13Q99616 98 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TRAV9-1A0A075B6T8 112 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 PEBP1P30086 187 aaKnown RBP10.13□□□□□ -0.79
SYNPO-202ENST00000394243 MPV17P39210 176 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TMEM240Q5SV17 173 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 G6PC2Q9NQR9 355 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 KIAA1551Q9HCM1 1747 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TMEM14DPA8MWL7 114 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF721Q8TF20 911 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 CRISPLD2Q9H0B8 497 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 SELENOKQ9Y6D0 94 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 COL22A1Q8NFW1 1626 aaPredicted RBP10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A10PA6NDY2 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A18PA6NE21 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A16PA6NEW6 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A20PA6NIJ5 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A8PA6NJQ4 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A7PA6NKC0 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A22PA8MWA6 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A12PA8MX19 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A5PA8MXJ8 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A23PA8MXZ1 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A15PP0C7V4 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A13PP0C7W8 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A14PP0C7W9 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FAM90A24PP0C7X0 464 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 CEACAM1P13688 526 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 SUMO2P61956 95 aaKnown RBP10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TRA2AQ13595 282 aaKnown RBP eCLIP10.13□□□□□ -0.79
SYNPO-202ENST00000394243 ZFAND6Q6FIF0 208 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 FADS6Q8N9I5 356 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TRAV8-4A0A0B4J246 113 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 A0A1B0GUT8 65 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TPTE2P1Q5T6R2 138 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF318Q5VUA4 2279 aa10.13□□□□□ -0.79
SYNPO-202ENST00000394243 TNFSF13O75888 250 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF826PQ6ZT77 177 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 ANKRD33Q7Z3H0 272 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 OR4X2Q8NGF9 303 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 KCNK17Q96T54 332 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 PLA2G2FQ9BZM2 168 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 LHFPL6Q9Y693 200 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 TRAV12-3A0A0B4J271 114 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 INO80CQ6PI98 192 aaPredicted RBP10.12□□□□□ -0.79
SYNPO-202ENST00000394243 NPIPB3Q92617 1050 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 SLC25A28Q96A46 364 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 COLCA2A8K830 154 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 CD3EP07766 207 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF658BQ4V348 819 aaPredicted RBP10.12□□□□□ -0.79
SYNPO-202ENST00000394243 SAMD5Q5TGI4 173 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 FAM117AQ9C073 453 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 GTSF1LQ9H1H1 148 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 AMBPP02760 352 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 MC5RP33032 325 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 ASPHD2Q6ICH7 369 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 LEAP2Q969E1 77 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 NRXN3Q9Y4C0 1643 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 NRAPQ86VF7 1730 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 RNF126Q9BV68 326 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 HIGD1CA8MV81 97 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 FBXW9Q5XUX1 488 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 DRAM1Q8N682 238 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 RTBDNQ9BSG5 229 aaPredicted RBP10.12□□□□□ -0.79
SYNPO-202ENST00000394243 SFXN3Q9BWM7 321 aa10.12□□□□□ -0.79
SYNPO-202ENST00000394243 RNASE7Q9H1E1 156 aaKnown RBP10.12□□□□□ -0.79
SYNPO-202ENST00000394243 GPX1P07203 203 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 COL9A1P20849 921 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 BTCP35070 178 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 GCSAMQ8N6F7 178 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 PTPRFP10586 1907 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 FOXI3A8MTJ6 420 aaPredicted RBP10.11□□□□□ -0.79
SYNPO-202ENST00000394243 SFTPCP11686 197 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 SLC25A47Q6Q0C1 308 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 CYSLTR1Q9Y271 337 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 HOXA3O43365 443 aaPredicted RBP10.11□□□□□ -0.79
SYNPO-202ENST00000394243 DNASE2BQ8WZ79 361 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 PEX7O00628 323 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 GAGE13Q4V321 117 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 C1orf185Q5T7R7 199 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 PEAR1Q5VY43 1037 aaPredicted RBP10.11□□□□□ -0.79
SYNPO-202ENST00000394243 RPP21Q9H633 154 aaKnown RBP10.11□□□□□ -0.79
SYNPO-202ENST00000394243 UNC13CQ8NB66 2214 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 A0A0G2JK05 382 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 C2CD4DB7Z1M9 353 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 MOSP00540 346 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 CXCL1P09341 107 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 C1QTNF9P0C862 333 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 GAGE2BQ13066 116 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 GAGE2EQ4V326 116 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 ZNF585BQ52M93 769 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 UNQ5815/PRO19632Q6UWF5 114 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 WDR82Q6UXN9 313 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 GATAD1Q8WUU5 269 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 NAA38Q9BRA0 125 aaKnown RBP10.11□□□□□ -0.79
SYNPO-202ENST00000394243 GAGE2DQ9UEU5 116 aa10.11□□□□□ -0.79
SYNPO-202ENST00000394243 FOXD3Q9UJU5 478 aaPredicted RBP10.11□□□□□ -0.79
SYNPO-202ENST00000394243 MFAP4P55083 255 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 CACNG7P62955 275 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 PAPPA-AS1Q5QFB9 102 aa10.1□□□□□ -0.79
SYNPO-202ENST00000394243 LRTM2Q8N967 370 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms