RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 C11orf1Q9H5F2 150 aa21.59■■□□□ 1.05
MSX1-201ENST00000382723 ZC4H2Q9NQZ6 224 aa21.59■■□□□ 1.05
MSX1-201ENST00000382723 FAM90A26D6RGX4 464 aa21.58■■□□□ 1.04
MSX1-201ENST00000382723 S100A11P31949 105 aa21.58■■□□□ 1.04
MSX1-201ENST00000382723 ARHGDIBP52566 201 aa21.58■■□□□ 1.04
MSX1-201ENST00000382723 UBE2KP61086 200 aa21.58■■□□□ 1.04
MSX1-201ENST00000382723 IGHV1-69DA0A0B4J2H0 117 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 VENTXO95231 258 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 TMEM50AO95807 157 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 IFNA17P01571 189 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 IGLV2-23P01705 113 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 IGHV1-69P01742 117 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 HKR1P10072 659 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 RPL12P30050 165 aaKnown RBP21.57■■□□□ 1.04
MSX1-201ENST00000382723 IFITM2Q01629 132 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 MALSU1Q96EH3 234 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 AJUBAQ96IF1 538 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 PDZD2O15018 2839 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 A0A0D9SG52 128 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 OOSP1A8MZH6 123 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 IGHV4-38-2P0DP08 117 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 CNTFRP26992 372 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 P2RY1P47900 373 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 CAV2P51636 162 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 ZNF345Q14585 488 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 OPCMLQ14982 345 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 GPR157Q5UAW9 335 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 BRD3OSQ6XYD6 125 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 PUSL1Q8N0Z8 303 aaKnown RBP21.57■■□□□ 1.04
MSX1-201ENST00000382723 KCNRGQ8N5I3 272 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 AQP10Q96PS8 301 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 BET1LQ9NYM9 111 aa21.57■■□□□ 1.04
MSX1-201ENST00000382723 C15orf61A6NNL5 157 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 UPK2O00526 184 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 SLC25A17O43808 307 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 AVPP01185 164 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 CD1BP29016 333 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 LGALS7P47929 136 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 ZDHHC16Q969W1 377 aa21.56■■□□□ 1.04
MSX1-201ENST00000382723 IGKV1D-33P01593 117 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 IGKV1-33P01594 117 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 IL6RP08887 468 aaPredicted RBP21.55■■□□□ 1.04
MSX1-201ENST00000382723 MYOD1P15172 320 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 PAX9P55771 341 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 HNF4GQ14541 408 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 CLEC9AQ6UXN8 241 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 RAB40CQ96S21 281 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 FOXC2Q99958 501 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 NUP50Q9UKX7 468 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 FAM24AA6NFZ4 105 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 CEBPZOSA8MTT3 80 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 H3BP45 60 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 MED6O75586 246 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 KBTBD11O94819 623 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 HABP2Q14520 560 aaPredicted RBP21.55■■□□□ 1.04
MSX1-201ENST00000382723 VMA21Q3ZAQ7 101 aa21.55■■□□□ 1.04
MSX1-201ENST00000382723 C4BPBP20851 252 aa21.54■■□□□ 1.04
MSX1-201ENST00000382723 HES1Q14469 280 aa21.54■■□□□ 1.04
MSX1-201ENST00000382723 OR2C3Q8N628 320 aa21.54■■□□□ 1.04
MSX1-201ENST00000382723 TMEM14BQ9NUH8 114 aa21.54■■□□□ 1.04
MSX1-201ENST00000382723 FOXA2Q9Y261 457 aaPredicted RBP21.54■■□□□ 1.04
MSX1-201ENST00000382723 AARDQ4LEZ3 155 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 CIARTQ8N365 385 aaPredicted RBP21.53■■□□□ 1.04
MSX1-201ENST00000382723 VSTM2AQ8TAG5 236 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 TPSG1Q9NRR2 321 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 PRNDQ9UKY0 176 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 OR51B2Q9Y5P1 312 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 SNRNP70P08621 437 aaKnown RBP21.53■■□□□ 1.04
MSX1-201ENST00000382723 RPL23AP62750 156 aaKnown RBP21.53■■□□□ 1.04
MSX1-201ENST00000382723 ZNF429Q86V71 674 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 DTD1Q8TEA8 209 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 TSNAXQ99598 290 aaKnown RBP21.53■■□□□ 1.04
MSX1-201ENST00000382723 LYRM2Q9NU23 88 aaPredicted RBP21.53■■□□□ 1.04
MSX1-201ENST00000382723 PSENENQ9NZ42 101 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 ITPR2Q14571 2701 aa21.53■■□□□ 1.04
MSX1-201ENST00000382723 PRRC2AP48634 2157 aaKnown RBP21.52■■□□□ 1.04
MSX1-201ENST00000382723 GPR137BO60478 399 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 OPN1MWP04001 364 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 OPN1MW2P0DN77 364 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 OPN1MW3P0DN78 364 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 SPCS3P61009 180 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 PSG5Q15238 335 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 FBLN7Q53RD9 439 aa21.52■■□□□ 1.04
MSX1-201ENST00000382723 KANTRA0A1W2PQU2 76 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 IGSF23A1L1A6 192 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 SMAD7O15105 426 aaKnown RBP21.51■■□□□ 1.03
MSX1-201ENST00000382723 MOSP00540 346 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 TMEM167AQ8TBQ9 72 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 TCF19Q9Y242 345 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 J3QLI3 93 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 KLF17Q5JT82 389 aaPredicted RBP21.51■■□□□ 1.03
MSX1-201ENST00000382723 OR52E5Q8NH55 327 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 OR4A5Q8NH83 315 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 BSCL2Q96G97 398 aaPredicted RBP21.51■■□□□ 1.03
MSX1-201ENST00000382723 EAF1Q96JC9 268 aaPredicted RBP21.51■■□□□ 1.03
MSX1-201ENST00000382723 SMIM8Q96KF7 97 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 HINT2Q9BX68 163 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 WSB1Q9Y6I7 421 aa21.51■■□□□ 1.03
MSX1-201ENST00000382723 CR1P17927 2039 aa21.5■■□□□ 1.03
MSX1-201ENST00000382723 BCL2L11O43521 198 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms